Variant report

Variant	rs28902182
Chromosome Location	chr2:234875956-234875957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11563030	1.00[AMR][1000 genomes]
rs11563031	1.00[AMR][1000 genomes]
rs11563032	1.00[AMR][1000 genomes]
rs11563127	1.00[AMR][1000 genomes]
rs11563128	1.00[AMR][1000 genomes]
rs11563129	1.00[AMR][1000 genomes]
rs11563253	1.00[AMR][1000 genomes]
rs2190952	1.00[AMR][1000 genomes]
rs28899480	1.00[AMR][1000 genomes]
rs28900424	1.00[AMR][1000 genomes]
rs28901878	1.00[AMR][1000 genomes]
rs28901880	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013712	chr2:234558457-235495825	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv532476	chr2:234595695-235134381	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:234849400-234883400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr2:234862600-234882200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:234863000-234882200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr2:234874000-234876000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:234874000-234879400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:234874800-234876200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:234875000-234876200	Enhancers	Brain Angular Gyrus	brain
8	chr2:234875000-234876200	Enhancers	Brain Hippocampus Middle	brain
9	chr2:234875000-234876400	Enhancers	Brain Cingulate Gyrus	brain
10	chr2:234875000-234878000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr2:234875200-234877600	Enhancers	Primary T cells fromperipheralblood	blood
12	chr2:234875200-234877600	Enhancers	Thymus	Thymus
13	chr2:234875400-234876200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr2:234875400-234876200	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr2:234875400-234876400	Enhancers	HSMMtube	muscle
16	chr2:234875600-234876400	Enhancers	Dnd41	blood
17	chr2:234875600-234878800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr2:234875800-234876200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:234875800-234877200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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