Variant report

Variant	rs28904579
Chromosome Location	chr8:89288296-89288297
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs28904575	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029898	chr8:88837956-89606641	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1030028	chr8:89060085-89733470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1019111	chr8:89186908-89475460	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv831386	chr8:89209788-89403546	Enhancers Genic enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv891170	chr8:89227970-89298199	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:89274800-89290600	Weak transcription	Aorta	Aorta
2	chr8:89276200-89289800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:89282400-89299200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:89283000-89290000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:89283200-89288400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:89283200-89289600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr8:89286600-89290200	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr8:89286800-89288600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:89287000-89290000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr8:89287000-89290400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr8:89287000-89290800	Enhancers	Osteobl	bone
12	chr8:89287800-89289200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr8:89287800-89290800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr8:89288000-89288600	Enhancers	Colon Smooth Muscle	Colon
15	chr8:89288000-89288800	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr8:89288000-89289000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:89288000-89289000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:89288000-89289000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr8:89288000-89289200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr8:89288000-89289200	Enhancers	HUVEC	blood vessel
21	chr8:89288000-89289200	Enhancers	NH-A	brain
22	chr8:89288000-89290800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:89288000-89291000	Enhancers	NHDF-Ad	bronchial
24	chr8:89288200-89288800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr8:89288200-89290200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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