Variant report

Variant	rs28909973
Chromosome Location	chr14:77731304-77731305
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs7142535	1.00[MEX][hapmap]
rs7149300	0.87[AMR][1000 genomes]
rs7149349	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv1361	chr14:77707417-77753024	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
3	nsv902104	chr14:77720741-77756321	Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs28909973	GSTZ1	cis	lymphoblastoid	seeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77723000-77734000	Weak transcription	Gastric	stomach
2	chr14:77727200-77732000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:77727400-77731800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr14:77727800-77731400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr14:77728000-77731400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr14:77729600-77732600	Enhancers	Fetal Brain Male	brain
7	chr14:77730400-77731400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr14:77730400-77732200	Enhancers	Fetal Brain Female	brain
9	chr14:77730600-77731600	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr14:77730800-77731800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr14:77731000-77731600	Enhancers	Spleen	Spleen
12	chr14:77731200-77732400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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