The 2.0 version of rSNPBase

Variant report

Variant rs28914472
Chromosome Location chr1:179153954-179153955
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:31 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179117800-179186000 Weak transcription Fetal Stomach stomach
2 chr1:179122000-179189400 Weak transcription Primary B cells from cord blood blood
3 chr1:179134000-179169000 Weak transcription Fetal Intestine Small intestine
4 chr1:179139400-179157200 Weak transcription K562 blood
5 chr1:179139400-179158800 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr1:179139400-179196800 Weak transcription Pancreas Pancrea
7 chr1:179144800-179159200 Weak transcription iPS-15b Cell Line embryonic stem cell
8 chr1:179145000-179158600 Weak transcription Primary hematopoietic stem cells short term culture blood
9 chr1:179145000-179159800 Weak transcription ES-I3 Cell Line embryonic stem cell
10 chr1:179145000-179159800 Weak transcription Brain Angular Gyrus brain
11 chr1:179145400-179159000 Weak transcription Right Ventricle heart
12 chr1:179146800-179175600 Weak transcription Cortex derived primary cultured neurospheres brain
13 chr1:179147600-179160000 Weak transcription Primary B cells from peripheral blood blood
14 chr1:179147600-179174600 Weak transcription Psoas Muscle Psoas
15 chr1:179148000-179186000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr1:179148400-179185800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr1:179148800-179156000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr1:179149200-179157200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr1:179149800-179157000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
20 chr1:179150600-179157200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
21 chr1:179150600-179176000 Weak transcription HSMM muscle
22 chr1:179150800-179154000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr1:179150800-179170600 Weak transcription Ovary ovary
24 chr1:179150800-179178000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr1:179150800-179180400 Weak transcription Breast Myoepithelial Primary Cells Breast
26 chr1:179151000-179155200 Weak transcription Esophagus oesophagus
27 chr1:179152400-179158600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
28 chr1:179153000-179154000 Strong transcription Primary T cells from cord blood blood
29 chr1:179153600-179160000 Weak transcription GM12878-XiMat blood
30 chr1:179153600-179169800 Weak transcription Small Intestine intestine
31 chr1:179153800-179154200 Enhancers Primary monocytes fromperipheralblood blood

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Last update: Aug 31, 2015