Variant report

Variant	rs28916324
Chromosome Location	chr5:151139445-151139446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:151139266-151140017	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:151133870..151141079-chr5:151148554..151154544,14	MCF-7	breast:
2	chr5:151136180..151141661-chr5:151146894..151154161,25	MCF-7	breast:

Variant related genes	Relation type
ATOX1	TF binding region
ENSG00000177556	Chromatin interaction
ENSG00000145907	Chromatin interaction

rs_ID	r²[population]
rs28916323	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28917171	1.00[AFR][1000 genomes]
rs28917200	1.00[AFR][1000 genomes]
rs28918972	0.89[AFR][1000 genomes]
rs59097497	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:151138400-151139600	Flanking Active TSS	Stomach Smooth Muscle	stomach
2	chr5:151138600-151139600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:151138600-151142800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:151138800-151139600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr5:151138800-151139600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:151138800-151139600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:151138800-151139600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:151138800-151139600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:151138800-151139600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr5:151138800-151139600	Enhancers	HMEC	breast
11	chr5:151138800-151139600	Enhancers	NHEK	skin
12	chr5:151138800-151149600	Weak transcription	Aorta	Aorta
13	chr5:151138800-151149800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:151139000-151139600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:151139000-151139600	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr5:151139000-151139600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr5:151139000-151139600	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr5:151139000-151139800	Enhancers	HepG2	liver
19	chr5:151139000-151142800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr5:151139000-151148800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr5:151139200-151139600	Enhancers	K562	blood
22	chr5:151139200-151140800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr5:151139200-151147600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr5:151139200-151149600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr5:151139400-151139600	Weak transcription	Pancreas	Pancrea
26	chr5:151139400-151142600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr5:151139400-151143000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr5:151139400-151145400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr5:151139400-151147400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr5:151139400-151148000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr5:151139400-151149800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr5:151139400-151149800	Weak transcription	Right Atrium	heart

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