Variant report

Variant	rs28921382
Chromosome Location	chr8:107672643-107672644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr8:107672503-107672703	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000253582	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs28921378	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv6342	chr8:107644092-107688898	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107670600-107672800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr8:107670800-107675800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:107670800-107675800	Weak transcription	Spleen	Spleen
4	chr8:107670800-107685800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:107671000-107673000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:107671000-107675800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:107671200-107672800	Enhancers	Fetal Heart	heart
8	chr8:107671200-107672800	Enhancers	Placenta Amnion	Placenta Amnion
9	chr8:107671200-107673000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr8:107671200-107673000	Enhancers	Small Intestine	intestine
11	chr8:107671200-107673000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr8:107671200-107674200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr8:107671200-107674800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr8:107671200-107675800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr8:107671200-107675800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:107671200-107697200	Weak transcription	HSMM	muscle
17	chr8:107671400-107672800	Enhancers	H1 Cell Line	embryonic stem cell
18	chr8:107671400-107672800	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr8:107671400-107672800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr8:107671400-107672800	Flanking Active TSS	GM12878-XiMat	blood
21	chr8:107671400-107673000	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr8:107671400-107673400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr8:107671400-107676600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr8:107671600-107672800	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr8:107671600-107673000	Enhancers	Primary B cells from peripheral blood	blood
26	chr8:107671600-107673000	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr8:107671600-107673000	Enhancers	Fetal Thymus	thymus
28	chr8:107671600-107674400	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr8:107671600-107674400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr8:107671600-107675000	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr8:107671600-107675800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr8:107671800-107672800	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr8:107671800-107673000	Flanking Active TSS	K562	blood
34	chr8:107672000-107672800	Enhancers	Fetal Kidney	kidney
35	chr8:107672000-107673000	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr8:107672000-107673000	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr8:107672000-107673000	Enhancers	Stomach Mucosa	stomach
38	chr8:107672000-107675800	Weak transcription	Right Atrium	heart
39	chr8:107672200-107672800	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr8:107672200-107672800	Enhancers	NHDF-Ad	bronchial
41	chr8:107672200-107673000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr8:107672200-107673000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr8:107672200-107673000	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr8:107672200-107673200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr8:107672200-107673200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr8:107672200-107673200	Enhancers	Right Ventricle	heart
47	chr8:107672200-107673800	Enhancers	Adipose Nuclei	Adipose
48	chr8:107672200-107675800	Weak transcription	Esophagus	oesophagus
49	chr8:107672200-107675800	Weak transcription	Left Ventricle	heart
50	chr8:107672200-107675800	Weak transcription	Ovary	ovary

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