Variant report

Variant	rs28924680
Chromosome Location	chr8:107739251-107739252
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107738435..107740351-chr8:107741469..107744040,2	K562	blood:
2	chr8:107738242..107740333-chr8:107752229..107754012,2	K562	blood:

Variant related genes	Relation type
ENSG00000164830	Chromatin interaction
ENSG00000251892	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17259107	0.82[EUR][1000 genomes]
rs56344098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72682864	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107710400-107755400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107719200-107742400	Weak transcription	Stomach Mucosa	stomach
3	chr8:107719600-107739600	Weak transcription	Left Ventricle	heart
4	chr8:107719600-107762400	Weak transcription	Lung	lung
5	chr8:107719600-107765600	Weak transcription	Colonic Mucosa	Colon
6	chr8:107719600-107775200	Weak transcription	Gastric	stomach
7	chr8:107719600-107777800	Weak transcription	Esophagus	oesophagus
8	chr8:107719800-107753800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr8:107724800-107751400	Weak transcription	Duodenum Mucosa	Duodenum
10	chr8:107731600-107748400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr8:107733000-107751200	Weak transcription	HepG2	liver
12	chr8:107734200-107750600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr8:107736200-107751600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr8:107737200-107748600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr8:107737200-107750000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr8:107737400-107739400	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr8:107737400-107739600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr8:107737400-107740200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr8:107737600-107739800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr8:107738000-107740000	Active TSS	Pancreatic Islets	Pancreatic Islet
21	chr8:107738000-107755400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr8:107738200-107739400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr8:107738200-107739400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:107738200-107739400	Active TSS	Fetal Lung	lung
25	chr8:107738200-107739400	Active TSS	Dnd41	blood
26	chr8:107738200-107739600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:107738200-107739600	Active TSS	Right Atrium	heart
28	chr8:107738200-107739800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr8:107738200-107739800	Active TSS	Brain Angular Gyrus	brain
30	chr8:107738200-107739800	Active TSS	Brain Germinal Matrix	brain
31	chr8:107738200-107739800	Active TSS	HSMM	muscle
32	chr8:107738200-107740000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr8:107738200-107740000	Active TSS	Fetal Brain Female	brain
34	chr8:107738200-107740200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr8:107738200-107740200	Active TSS	Brain Substantia Nigra	brain
36	chr8:107738200-107740200	Active TSS	HSMMtube	muscle
37	chr8:107738200-107740800	Active TSS	Brain Anterior Caudate	brain
38	chr8:107738400-107739400	Active TSS	Muscle Satellite Cultured Cells	--
39	chr8:107738600-107739600	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr8:107738600-107739600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr8:107738600-107739600	Weak transcription	Fetal Muscle Trunk	muscle
42	chr8:107738600-107739600	Weak transcription	Ovary	ovary
43	chr8:107738600-107739600	Weak transcription	Psoas Muscle	Psoas
44	chr8:107738600-107739800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr8:107738600-107739800	Weak transcription	Thymus	Thymus
46	chr8:107738600-107740600	Weak transcription	Aorta	Aorta
47	chr8:107738600-107751600	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr8:107738600-107755400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr8:107738600-107755400	Weak transcription	Fetal Intestine Small	intestine
50	chr8:107738800-107739400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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