Variant report

Variant	rs28938786
Chromosome Location	chr2:113758324-113758325
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:14)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:14 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TRIM28	chr2:113757864-113758489	K562	blood:	n/a	n/a
2	SETDB1	chr2:113757961-113758556	U2OS	brain:	n/a	n/a
3	ARID3A	chr2:113757999-113758367	K562	blood:	n/a	n/a
4	ZNF143	chr2:113758037-113758326	H1-hESC	embryonic stem cell:	n/a	n/a
5	TRIM28	chr2:113758062-113758358	K562	blood:	n/a	n/a
6	STAT3	chr2:113758189-113758340	MCF10A-Er-Src	breast:	n/a	n/a
7	SETDB1	chr2:113757013-113759536	K562	blood:	n/a	n/a
8	CBX3	chr2:113757942-113758593	K562	blood:	n/a	n/a
9	CBX3	chr2:113758069-113758425	HCT-116	colon:	n/a	n/a
10	CBX3	chr2:113757844-113758512	K562	blood:	n/a	n/a
11	KAP1	chr2:113757994-113758482	U2OS	brain:	n/a	n/a
12	EP300	chr2:113758083-113758352	K562	blood:	n/a	n/a
13	ZNF143	chr2:113757995-113758402	K562	blood:	n/a	n/a
14	KAP1	chr2:113757407-113758957	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:113756681..113759563-chr2:113795115..113796939,2	K562	blood:
2	chr2:113757191..113759734-chr2:113762497..113764783,2	K562	blood:
3	chr2:113756642..113760265-chr2:113761535..113765046,5	K562	blood:
4	chr2:113751007..113754364-chr2:113757829..113763549,5	K562	blood:
5	chr2:113757048..113759917-chr2:113761667..113764022,3	MCF-7	breast:
6	chr2:113752348..113754639-chr2:113757517..113759380,2	MCF-7	breast:

No data

Variant related genes	Relation type
IL36A	TF binding region
ENSG00000232090	Chromatin interaction
ENSG00000136694	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35029104	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532471	chr2:113682449-113862981	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1007254	chr2:113726982-113887782	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv535894	chr2:113726982-113887782	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv874878	chr2:113742734-113776076	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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