Variant report

Variant	rs2894657
Chromosome Location	chr6:45894077-45894078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10807328	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12204991	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2105168	0.84[EUR][1000 genomes]
rs3777552	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3777553	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3777554	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3777556	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3777557	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3777558	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3777559	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3798258	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3798259	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs58427559	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6904888	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6939554	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6940409	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9349335	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9349336	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9381410	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9381411	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9395134	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9395135	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1021917	chr6:45879064-45898314	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45866600-45898400	Weak transcription	Colonic Mucosa	Colon
2	chr6:45881200-45908000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:45882400-45898400	Weak transcription	Fetal Intestine Large	intestine
4	chr6:45886800-45910600	Weak transcription	Psoas Muscle	Psoas
5	chr6:45887400-45896600	Weak transcription	Fetal Intestine Small	intestine
6	chr6:45889200-45897200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:45890000-45898000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:45890000-45898000	Weak transcription	Right Atrium	heart
9	chr6:45890000-45898000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:45890600-45894800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:45890600-45901600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:45891000-45898400	Weak transcription	Fetal Kidney	kidney
13	chr6:45891400-45898000	Weak transcription	Fetal Heart	heart
14	chr6:45891600-45898400	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr6:45891800-45896400	Weak transcription	Right Ventricle	heart
16	chr6:45891800-45896600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:45892000-45895600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:45892200-45895000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr6:45892200-45897400	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr6:45892200-45897400	Weak transcription	Osteobl	bone
21	chr6:45892600-45894600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:45892800-45894800	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr6:45892800-45894800	Weak transcription	Placenta	Placenta
24	chr6:45892800-45897000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:45892800-45897200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr6:45893400-45897400	Weak transcription	Left Ventricle	heart

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