Variant report

Variant	rs2895385
Chromosome Location	chr3:111254219-111254220
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1391361	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs16858218	0.86[JPT][hapmap]
rs16858221	0.88[JPT][hapmap]
rs16858237	0.86[JPT][hapmap]
rs17281276	0.88[AFR][1000 genomes]
rs62273540	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6773238	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6776835	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6785519	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73226214	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs981953	0.86[JPT][hapmap]
rs981954	0.86[JPT][hapmap]
rs981955	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv997756	chr3:111226058-111376585	Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv3946	chr3:111236035-111283038	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111253000-111254400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:111253000-111254600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:111253200-111254400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:111253200-111254400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:111253600-111254400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr3:111253600-111254600	Enhancers	Primary B cells from peripheral blood	blood
7	chr3:111253600-111257400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:111253800-111257200	Weak transcription	Hela-S3	cervix
9	chr3:111253800-111257200	Weak transcription	HMEC	breast
10	chr3:111253800-111257200	Weak transcription	NH-A	brain
11	chr3:111254000-111254400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr3:111254000-111254600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr3:111254200-111257000	Weak transcription	Dnd41	blood
14	chr3:111254200-111257200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:111254200-111257200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:111254200-111257200	Weak transcription	HSMM	muscle
17	chr3:111254200-111257200	Weak transcription	Osteobl	bone
18	chr3:111254200-111257400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:111254200-111257400	Weak transcription	HSMMtube	muscle
20	chr3:111254200-111257800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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