Variant report

Variant	rs28954081
Chromosome Location	chr7:127880722-127880723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11973652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11978419	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11980266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv33413	chr7:127800064-127929303	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
4	nsv5945	chr7:127852004-127880768	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv429811	chr7:127857891-127889049	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127878000-127881600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
2	chr7:127878000-127881600	ZNF genes & repeats	Placenta	Placenta
3	chr7:127878600-127887400	Weak transcription	Right Atrium	heart
4	chr7:127880200-127881000	ZNF genes & repeats	Pancreas	Pancrea
5	chr7:127880200-127881400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:127880600-127880800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:127880600-127880800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:127880600-127880800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr7:127880600-127881000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
10	chr7:127880600-127881000	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
11	chr7:127880600-127881000	Bivalent Enhancer	Right Ventricle	heart
12	chr7:127880600-127881200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:127880600-127881200	Bivalent Enhancer	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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