Variant report

Variant	rs2896165
Chromosome Location	chr5:14881275-14881276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr5:14879589-14881286	Hela-S3	cervix:	n/a	chr5:14880528-14880537 chr5:14880528-14880537 chr5:14880526-14880539 chr5:14880528-14880537 chr5:14880528-14880537 chr5:14880526-14880537

No.	Distal block	Cell Line	Cell type
1	chr5:14870615..14876771-chr5:14877137..14881397,9	MCF-7	breast:
2	chr5:14879517..14881326-chr5:14882980..14885197,2	MCF-7	breast:
3	chr5:14765139..14767276-chr5:14879416..14882042,3	MCF-7	breast:

Variant related genes	Relation type
HNRNPKP5	TF binding region
ENSG00000272057	Chromatin interaction
ENSG00000249928	Chromatin interaction
ENSG00000154122	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10513191	0.90[CHB][hapmap];0.91[MEX][hapmap]
rs11747201	0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs16903726	1.00[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16903727	0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28399309	0.94[ASN][1000 genomes]
rs3789186	0.89[ASN][1000 genomes]
rs835148	0.83[ASN][1000 genomes]
rs9885557	0.95[CHB][hapmap];1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv830212	chr5:14784197-14966683	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	esv2753381	chr5:14814900-14882800	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
4	esv2755533	chr5:14814900-14882800	Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	esv2755538	chr5:14814900-14927500	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
6	nsv530221	chr5:14859687-15364470	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
7	esv1833901	chr5:14871952-14884822	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14873000-14882000	Weak transcription	Psoas Muscle	Psoas
2	chr5:14879400-14881400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr5:14879400-14881400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:14879400-14881400	Enhancers	HepG2	liver
5	chr5:14879600-14881400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:14879600-14883400	Enhancers	HMEC	breast
7	chr5:14879800-14881400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:14880000-14881400	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr5:14880400-14881400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr5:14880400-14881400	Enhancers	NHDF-Ad	bronchial
11	chr5:14880600-14882400	Weak transcription	Fetal Heart	heart
12	chr5:14880800-14883800	Enhancers	Left Ventricle	heart
13	chr5:14881000-14882000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:14881000-14882200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr5:14881000-14882400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr5:14881000-14882600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr5:14881000-14892600	Weak transcription	Fetal Intestine Small	intestine
18	chr5:14881200-14881800	Weak transcription	Right Atrium	heart
19	chr5:14881200-14882000	Weak transcription	Right Ventricle	heart
20	chr5:14881200-14882400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr5:14881200-14882600	Weak transcription	Adipose Nuclei	Adipose
22	chr5:14881200-14884200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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