Variant report

Variant	rs2896433
Chromosome Location	chr8:85359997-85359998
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10453097	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10504803	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11984749	0.88[EUR][1000 genomes]
rs12114244	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1319379	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13248532	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13256410	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13257448	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13259587	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13261209	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13265396	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13271249	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13275430	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1351223	0.83[EUR][1000 genomes]
rs1479092	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1479093	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1479094	0.92[EUR][1000 genomes]
rs1479098	0.84[EUR][1000 genomes]
rs1503602	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1566791	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1824887	0.83[EUR][1000 genomes]
rs1994149	0.83[EUR][1000 genomes]
rs2127218	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28751114	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4739691	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4740014	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4740016	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4740017	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4740020	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4740021	0.85[EUR][1000 genomes]
rs4740022	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4740023	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4740024	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60533047	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6473553	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7829180	0.81[AMR][1000 genomes]
rs7845599	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831375	chr8:85272352-85463621	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:85359400-85360600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr8:85359400-85361800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr8:85359400-85362000	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:85359400-85362200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr8:85359400-85362200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr8:85359600-85360600	Enhancers	H9 Cell Line	embryonic stem cell
7	chr8:85359600-85361400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:85359600-85361800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr8:85359600-85362000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr8:85359600-85362000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr8:85359800-85361000	Weak transcription	H1 Cell Line	embryonic stem cell

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