Variant report

Variant	rs28972467
Chromosome Location	chr4:49101777-49101778
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:48 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010381	chr4:48701525-49309842	Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1011910	chr4:48784332-49154757	ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv427680	chr4:48829607-49660117	ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	esv2757057	chr4:49049101-49628914	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	esv2759251	chr4:49049101-49660117	Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1012915	chr4:49052210-49297223	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv1007703	chr4:49052210-49658600	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	esv2757934	chr4:49057410-49660117	ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
9	nsv428442	chr4:49057410-49660117	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
10	nsv1001526	chr4:49057815-49154757	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1002272	chr4:49081001-49309842	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv1003616	chr4:49081001-49579167	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
13	nsv1004427	chr4:49081001-49658211	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
14	nsv1004834	chr4:49081001-49658600	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
15	nsv1002330	chr4:49085141-49561973	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
16	nsv1010304	chr4:49085141-49590590	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
17	nsv998913	chr4:49085141-49620873	Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
18	esv3584802	chr4:49089374-49658612	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
19	esv3335041	chr4:49092195-49206893	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
20	esv3375539	chr4:49092195-49206893	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	esv3386579	chr4:49092195-49207393	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
22	esv3332716	chr4:49092195-49338941	ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
23	esv3350648	chr4:49092195-49338941	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
24	esv3394480	chr4:49092195-49338941	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
25	nsv820500	chr4:49092778-49169783	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv12520	chr4:49093222-49158949	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv1011733	chr4:49093774-49590590	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
28	nsv1011641	chr4:49093774-49620873	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
29	nsv1006629	chr4:49093774-49650094	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
30	nsv1005266	chr4:49093774-49656501	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
31	nsv1010515	chr4:49093774-49658600	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
32	esv2760850	chr4:49093786-49309854	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
33	esv2763793	chr4:49093786-49309854	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
34	nsv594139	chr4:49094607-49189801	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
35	esv7646	chr4:49094921-49123141	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
36	esv3500224	chr4:49094958-49104686	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
37	esv3500225	chr4:49094958-49104686	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
38	nsv594140	chr4:49098006-49189801	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
39	esv3481	chr4:49098280-49158453	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
40	esv9489	chr4:49098402-49106822	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
41	esv6427	chr4:49099112-49123136	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
42	nsv469558	chr4:49099282-49200704	ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
43	esv7693	chr4:49099408-49106787	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
44	esv7731	chr4:49099674-49151810	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
45	esv8368	chr4:49100010-49151810	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
46	esv7840	chr4:49100601-49107811	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription	n/a	n/a	inside rSNPs	diseases
47	esv3406556	chr4:49101354-49101890	ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
48	esv9660	chr4:49101538-49151809	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:49098200-49102400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr4:49098200-49102400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
3	chr4:49098200-49102400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
4	chr4:49098200-49102400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
5	chr4:49098200-49102400	ZNF genes & repeats	Esophagus	oesophagus
6	chr4:49098200-49102400	ZNF genes & repeats	Left Ventricle	heart
7	chr4:49098200-49102400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
8	chr4:49098200-49102600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
9	chr4:49098200-49102600	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:49098200-49102600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:49098200-49102600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:49098200-49102600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr4:49098200-49102600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:49098200-49102600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:49098200-49102600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr4:49098200-49102600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
17	chr4:49098200-49102600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
18	chr4:49098200-49102600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
19	chr4:49098200-49102600	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
20	chr4:49098200-49102600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
21	chr4:49098200-49102600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
22	chr4:49098200-49102600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
23	chr4:49098200-49102600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr4:49098200-49102600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
25	chr4:49098200-49102600	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
26	chr4:49098200-49102600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:49098200-49102600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr4:49098200-49102600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
29	chr4:49098200-49102600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
30	chr4:49098200-49102600	ZNF genes & repeats	Aorta	Aorta
31	chr4:49098200-49102600	ZNF genes & repeats	Brain Angular Gyrus	brain
32	chr4:49098200-49102600	ZNF genes & repeats	Brain Anterior Caudate	brain
33	chr4:49098200-49102600	ZNF genes & repeats	Brain Cingulate Gyrus	brain
34	chr4:49098200-49102600	ZNF genes & repeats	Brain Hippocampus Middle	brain
35	chr4:49098200-49102600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
36	chr4:49098200-49102600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
37	chr4:49098200-49102600	ZNF genes & repeats	Brain Substantia Nigra	brain
38	chr4:49098200-49102600	ZNF genes & repeats	Colon Smooth Muscle	Colon
39	chr4:49098200-49102600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
40	chr4:49098200-49102600	ZNF genes & repeats	Fetal Brain Male	brain
41	chr4:49098200-49102600	ZNF genes & repeats	Fetal Heart	heart
42	chr4:49098200-49102600	ZNF genes & repeats	Fetal Kidney	kidney
43	chr4:49098200-49102600	ZNF genes & repeats	Fetal Lung	lung
44	chr4:49098200-49102600	ZNF genes & repeats	Pancreas	Pancrea
45	chr4:49098200-49102600	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
46	chr4:49098200-49102600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
47	chr4:49098200-49102600	ZNF genes & repeats	Rectal Smooth Muscle	rectum
48	chr4:49098200-49102600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
49	chr4:49098200-49102600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
50	chr4:49098200-49102600	ZNF genes & repeats	Small Intestine	intestine

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