Variant report

Variant	rs2897618
Chromosome Location	chr4:152278707-152278708
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10024721	0.86[EUR][1000 genomes]
rs10471070	0.86[EUR][1000 genomes]
rs11099806	0.86[EUR][1000 genomes]
rs11099807	0.86[EUR][1000 genomes]
rs11728880	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12503602	0.82[EUR][1000 genomes]
rs2407171	0.86[EUR][1000 genomes]
rs4455397	0.84[EUR][1000 genomes]
rs4696079	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4696080	0.87[EUR][1000 genomes]
rs4696249	0.86[EUR][1000 genomes]
rs4696250	0.86[EUR][1000 genomes]
rs4696251	0.86[EUR][1000 genomes]
rs4696256	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6810430	0.86[EUR][1000 genomes]
rs6831644	0.81[EUR][1000 genomes]
rs7435680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7678653	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692939	0.86[EUR][1000 genomes]
rs9991859	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880262	chr4:151712054-152519899	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv881526	chr4:151968295-152489087	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv1025192	chr4:152202627-152498890	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv537307	chr4:152202627-152498890	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2897618	FAM160A1	cis	Whole Blood	GTEx

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152264600-152279400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:152269600-152280600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:152269800-152281000	Weak transcription	Fetal Intestine Small	intestine
4	chr4:152275600-152282000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:152277400-152280800	Weak transcription	Right Atrium	heart
6	chr4:152278000-152279400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr4:152278000-152281200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:152278200-152279200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:152278200-152279400	Weak transcription	HMEC	breast
10	chr4:152278400-152278800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:152278400-152278800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:152278600-152278800	Enhancers	Brain Cingulate Gyrus	brain
13	chr4:152278600-152278800	Enhancers	Fetal Brain Male	brain
14	chr4:152278600-152279600	Enhancers	NHEK	skin
15	chr4:152278600-152279800	Weak transcription	Brain Angular Gyrus	brain
16	chr4:152278600-152281000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr4:152278600-152281400	Enhancers	Brain Anterior Caudate	brain
18	chr4:152278600-152281600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr4:152278600-152282600	Enhancers	Cortex derived primary cultured neurospheres	brain

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