Variant report

Variant	rs2898291
Chromosome Location	chr8:11539383-11539384
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11784691	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11997009	0.87[ASN][1000 genomes]
rs13251684	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28447194	0.96[ASN][1000 genomes]
rs28530664	0.81[ASN][1000 genomes]
rs4367493	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4840576	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56109436	0.96[ASN][1000 genomes]
rs7386288	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv1017865	chr8:11377795-11579954	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1018978	chr8:11438267-11858466	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11528800-11547200	Weak transcription	Pancreas	Pancrea
2	chr8:11534400-11539400	Active TSS	Left Ventricle	heart
3	chr8:11534400-11539600	Active TSS	Fetal Heart	heart
4	chr8:11534400-11539600	Bivalent/Poised TSS	Fetal Intestine Small	intestine
5	chr8:11534400-11541200	Active TSS	Right Atrium	heart
6	chr8:11535400-11540600	Active TSS	Ovary	ovary
7	chr8:11535600-11541400	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
8	chr8:11537200-11539800	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:11538200-11539600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
10	chr8:11538200-11541000	Active TSS	Right Ventricle	heart
11	chr8:11538400-11539400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr8:11538600-11539600	Bivalent/Poised TSS	Stomach Mucosa	stomach
13	chr8:11539000-11547000	Weak transcription	Gastric	stomach
14	chr8:11539200-11539400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
15	chr8:11539200-11539400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
16	chr8:11539200-11539400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
17	chr8:11539200-11539400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:11539200-11539600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links