Variant report

Variant	rs2898570
Chromosome Location	chr3:195074999-195075000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:195073143..195075655-chr3:195078501..195080208,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10933706	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11718218	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1832667	0.84[EUR][1000 genomes]
rs2050809	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2050810	0.87[EUR][1000 genomes]
rs2410803	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2410839	0.87[EUR][1000 genomes]
rs28375276	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3087885	0.87[EUR][1000 genomes]
rs3773418	0.85[EUR][1000 genomes]
rs4677671	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4677825	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4677830	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58204696	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6437467	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6780743	0.81[EUR][1000 genomes]
rs6791601	0.88[EUR][1000 genomes]
rs6791943	0.81[EUR][1000 genomes]
rs6792029	0.81[EUR][1000 genomes]
rs6793035	0.87[EUR][1000 genomes]
rs6795263	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73080837	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73080839	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7610022	0.86[EUR][1000 genomes]
rs7612694	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7638924	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7643947	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7644002	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7649142	0.86[EUR][1000 genomes]
rs823297	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs823298	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs823299	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs823303	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs823304	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs823305	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs823307	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs823308	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs823309	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs823312	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs823313	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9831944	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9832920	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9860389	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9863901	0.87[EUR][1000 genomes]
rs9878312	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009796	chr3:194737333-195124248	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1014826	chr3:194834615-195631793	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
3	nsv536876	chr3:194834615-195631793	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
4	nsv533904	chr3:194868329-195438728	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	65 gene(s)	inside rSNPs	diseases
5	nsv1010168	chr3:194874494-195135790	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv536877	chr3:194874494-195135790	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv997956	chr3:194879534-195087539	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv536878	chr3:194879534-195087539	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
9	esv1832781	chr3:194902818-195528226	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	62 gene(s)	inside rSNPs	diseases
10	nsv432508	chr3:194916131-195478861	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	59 gene(s)	inside rSNPs	diseases
11	nsv432510	chr3:194935314-195478861	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	59 gene(s)	inside rSNPs	diseases
12	nsv1005519	chr3:194964301-195340515	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
13	nsv432511	chr3:194986167-195479748	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
14	nsv432512	chr3:195007260-195475989	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	54 gene(s)	inside rSNPs	diseases
15	nsv526569	chr3:195038287-195123495	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
16	nsv878138	chr3:195057001-195477791	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases
17	nsv878139	chr3:195058837-195158031	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
18	esv1799680	chr3:195060129-195154361	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
19	nsv878140	chr3:195062395-195096625	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
20	nsv878141	chr3:195065255-195158031	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv1006229	chr3:195071421-195474751	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:194992600-195090000	Weak transcription	Aorta	Aorta
2	chr3:194993000-195076000	Weak transcription	Fetal Heart	heart
3	chr3:195010000-195076400	Weak transcription	Brain Angular Gyrus	brain
4	chr3:195034800-195076800	Weak transcription	Psoas Muscle	Psoas
5	chr3:195040400-195076400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:195040400-195076600	Weak transcription	Brain Anterior Caudate	brain
7	chr3:195040400-195079400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr3:195040400-195108400	Weak transcription	Colonic Mucosa	Colon
9	chr3:195040600-195111200	Weak transcription	Fetal Brain Male	brain
10	chr3:195040800-195076400	Weak transcription	Brain Hippocampus Middle	brain
11	chr3:195041000-195077000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:195041000-195131200	Weak transcription	Gastric	stomach
13	chr3:195041200-195077200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:195041400-195076800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr3:195041600-195077800	Weak transcription	Fetal Brain Female	brain
16	chr3:195048800-195076800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr3:195049600-195106000	Weak transcription	HUVEC	blood vessel
18	chr3:195051800-195077000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr3:195052000-195076400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr3:195052200-195076200	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:195052200-195076800	Weak transcription	Spleen	Spleen
22	chr3:195052200-195077000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:195052200-195102800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr3:195052400-195076400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr3:195052400-195076800	Weak transcription	Ovary	ovary
26	chr3:195052400-195076800	Weak transcription	Right Ventricle	heart
27	chr3:195052400-195118000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr3:195052600-195077200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr3:195052600-195090400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr3:195053800-195090200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr3:195059200-195076600	Weak transcription	Thymus	Thymus
32	chr3:195059200-195076800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr3:195059200-195076800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr3:195059200-195076800	Weak transcription	Lung	lung
35	chr3:195059200-195077000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr3:195059800-195077000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr3:195060000-195076800	Weak transcription	Fetal Stomach	stomach
38	chr3:195061400-195090200	Weak transcription	Placenta	Placenta
39	chr3:195061600-195076800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr3:195061600-195076800	Weak transcription	Fetal Muscle Trunk	muscle
41	chr3:195061600-195101800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr3:195062000-195090200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr3:195062600-195102000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr3:195062800-195076400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr3:195063000-195077000	Weak transcription	Duodenum Mucosa	Duodenum
46	chr3:195063200-195076800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr3:195063200-195077800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr3:195063200-195084400	Weak transcription	Fetal Lung	lung
49	chr3:195063400-195076400	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr3:195063400-195077000	Weak transcription	Rectal Mucosa Donor 29	rectum

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