Variant report

Variant	rs28986281
Chromosome Location	chr6:28845470-28845471
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28986280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41286271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883518	chr6:28792477-28911802	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
2	nsv883519	chr6:28792477-28936556	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
3	nsv427748	chr6:28831888-28999434	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
4	nsv601212	chr6:28833225-28893927	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
5	nsv462667	chr6:28834646-28893927	Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28842200-28846600	Enhancers	Fetal Thymus	thymus
2	chr6:28843600-28847000	Enhancers	K562	blood
3	chr6:28843800-28848000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:28844200-28848000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:28844200-28848400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:28844200-28848400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:28844400-28848200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:28844600-28848000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:28844800-28848200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr6:28844800-28848200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:28844800-28848400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:28845000-28845600	Enhancers	Fetal Intestine Large	intestine
13	chr6:28845000-28846000	Enhancers	Fetal Intestine Small	intestine
14	chr6:28845000-28847600	Enhancers	Thymus	Thymus
15	chr6:28845200-28845600	Active TSS	HepG2	liver
16	chr6:28845400-28845800	Active TSS	Rectal Mucosa Donor 29	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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