Variant report

Variant	rs28990373
Chromosome Location	chr6:24146761-24146762
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12530443	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9791210	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24127600-24146800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:24142000-24148000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:24142000-24149800	Weak transcription	Fetal Brain Male	brain
4	chr6:24142200-24147800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:24144800-24148400	Weak transcription	Fetal Brain Female	brain
6	chr6:24145600-24149600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:24145800-24149400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:24145800-24149800	Enhancers	Brain Germinal Matrix	brain
9	chr6:24146400-24147800	Enhancers	HepG2	liver
10	chr6:24146400-24148600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:24146600-24147600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr6:24146600-24148200	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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