Variant report

Variant	rs28994662
Chromosome Location	chr6:30060597-30060598
allele	-/GAAA/GAAAGAAA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432866	chr6:30026321-30080921	Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv884051	chr6:30059451-30071279	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv884050	chr6:30059451-30071330	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv884052	chr6:30059592-30067681	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv884053	chr6:30059592-30070538	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30058400-30062200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:30058600-30061000	Enhancers	Fetal Intestine Small	intestine
3	chr6:30058600-30061400	Enhancers	Fetal Intestine Large	intestine
4	chr6:30060000-30060600	Enhancers	Stomach Mucosa	stomach
5	chr6:30060000-30063000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:30060000-30063000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:30060000-30063000	Weak transcription	A549	lung
8	chr6:30060000-30064800	Weak transcription	Gastric	stomach
9	chr6:30060200-30061000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:30060200-30063000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:30060200-30063000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:30060200-30063000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:30060200-30063000	Weak transcription	NHEK	skin
14	chr6:30060200-30063200	Weak transcription	HMEC	breast
15	chr6:30060200-30065600	Weak transcription	Spleen	Spleen
16	chr6:30060400-30063000	Weak transcription	Hela-S3	cervix
17	chr6:30060400-30065200	Weak transcription	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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