Variant report

Variant	rs2899810
Chromosome Location	chr15:73138616-73138617
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2012304	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2053855	1.00[EUR][1000 genomes]
rs34793011	0.82[AFR][1000 genomes]
rs895902	1.00[AMR][1000 genomes]
rs930662	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs930663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482512	chr15:73023099-73175952	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73131000-73139000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr15:73137800-73139000	Weak transcription	Fetal Muscle Leg	muscle
3	chr15:73138000-73138800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:73138000-73138800	Enhancers	Adipose Nuclei	Adipose
5	chr15:73138000-73139000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:73138000-73141000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:73138400-73138800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr15:73138400-73139200	Enhancers	Colon Smooth Muscle	Colon
9	chr15:73138600-73138800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr15:73138600-73140800	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr15:73138600-73144400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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