Variant report

Variant	rs2899893
Chromosome Location	chr14:40108437-40108438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:40108419..40110081-chr14:40116251..40119239,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10140236	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11623442	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17109494	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17109496	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs28591152	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2899894	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4243636	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4243637	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4255703	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4553501	0.86[AMR][1000 genomes]
rs4899376	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4899378	0.84[AMR][1000 genomes]
rs4902864	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs59549540	0.86[AMR][1000 genomes]
rs61273095	0.86[AMR][1000 genomes]
rs7156048	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7156184	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7156612	0.82[AMR][1000 genomes]
rs7156701	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7156760	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7156873	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7156921	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7157065	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs730855	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs730856	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9943978	0.85[AMR][1000 genomes]
rs9943980	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9943981	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9944043	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv915558	chr14:39944831-40165370	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv832775	chr14:40038735-40193559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:40108400-40111800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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