Variant report

Variant	rs29001255
Chromosome Location	chr10:99256360-99256361
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99205729..99207747-chr10:99256104..99259230,4	MCF-7	breast:
2	chr10:99184102..99187983-chr10:99256299..99259028,4	MCF-7	breast:
3	chr10:99254835..99256478-chr10:99258857..99262357,3	MCF-7	breast:
4	chr10:99255590..99258774-chr10:99331777..99334688,4	MCF-7	breast:
5	chr10:99255036..99258001-chr10:99391751..99393858,2	K562	blood:
6	chr10:99204416..99207741-chr10:99255231..99259773,5	K562	blood:
7	chr10:99230735..99233202-chr10:99255020..99257889,3	MCF-7	breast:
8	chr10:99249819..99251861-chr10:99254679..99256807,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000171160	Chromatin interaction
ENSG00000171314	Chromatin interaction
ENSG00000224474	Chromatin interaction
ENSG00000171307	Chromatin interaction
ENSG00000171311	Chromatin interaction
ENSG00000165887	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs29001250	1.00[EUR][1000 genomes]
rs29001264	0.90[AFR][1000 genomes]
rs29001318	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99239400-99257400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:99240800-99257400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:99241200-99256800	Weak transcription	Colonic Mucosa	Colon
4	chr10:99241200-99256800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:99241800-99256400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr10:99244200-99257200	Weak transcription	Placenta	Placenta
7	chr10:99250600-99256800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr10:99250800-99256600	Weak transcription	NHLF	lung
9	chr10:99250800-99256800	Weak transcription	Aorta	Aorta
10	chr10:99250800-99257400	Weak transcription	Ovary	ovary
11	chr10:99251000-99256800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr10:99251200-99256400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:99251200-99256600	Weak transcription	Liver	Liver
14	chr10:99251200-99256800	Weak transcription	HSMMtube	muscle
15	chr10:99252200-99257200	Enhancers	Brain Cingulate Gyrus	brain
16	chr10:99253000-99256600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:99253000-99257000	Enhancers	Brain Anterior Caudate	brain
18	chr10:99253000-99257200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr10:99253000-99257200	Enhancers	Right Atrium	heart
20	chr10:99253200-99257200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr10:99253400-99257000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:99253400-99257200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:99253400-99257200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr10:99253600-99256600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:99253600-99256800	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr10:99253600-99257000	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr10:99253600-99257200	Enhancers	Fetal Heart	heart
28	chr10:99253800-99256400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr10:99253800-99256800	Enhancers	Brain Germinal Matrix	brain
30	chr10:99253800-99257200	Enhancers	Primary T cells fromperipheralblood	blood
31	chr10:99253800-99257200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr10:99254000-99256800	Enhancers	H1 Cell Line	embryonic stem cell
33	chr10:99254000-99256800	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr10:99254000-99256800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr10:99254200-99256400	Weak transcription	A549	lung
36	chr10:99254200-99256800	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr10:99254200-99256800	Enhancers	HepG2	liver
38	chr10:99254200-99256800	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr10:99254200-99257200	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr10:99254400-99256600	Enhancers	Fetal Brain Female	brain
41	chr10:99254400-99256800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr10:99254400-99256800	Enhancers	NHEK	skin
43	chr10:99254400-99257200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr10:99254400-99257400	Enhancers	Fetal Lung	lung
45	chr10:99254600-99256400	Enhancers	K562	blood
46	chr10:99254600-99256800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr10:99254600-99257400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr10:99254800-99256600	Enhancers	Primary hematopoietic stem cells short term culture	blood
49	chr10:99254800-99256800	Enhancers	NH-A	brain
50	chr10:99254800-99257200	Enhancers	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links