Variant report

Variant	rs2900401
Chromosome Location	chr9:108459311-108459312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:108459267..108461864-chr9:108470911..108472758,2	K562	blood:
2	chr9:108423380..108425504-chr9:108456986..108459535,2	MCF-7	breast:
3	chr9:108456828..108459510-chr9:108460242..108461913,3	MCF-7	breast:
4	chr9:108451266..108453229-chr9:108456840..108459511,2	K562	blood:
5	chr9:108396366..108398534-chr9:108458632..108460449,2	K562	blood:
6	chr9:108451729..108454266-chr9:108456840..108459678,2	K562	blood:

Variant related genes	Relation type
ENSG00000186051	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58242407	1.00[AMR][1000 genomes]
rs59248402	1.00[AMR][1000 genomes]
rs61150079	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893693	chr9:108427062-108683134	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108455800-108459800	Active TSS	Skeletal Muscle Male	skeletal muscle
2	chr9:108457800-108463200	Weak transcription	Small Intestine	intestine
3	chr9:108457800-108472800	Weak transcription	Spleen	Spleen
4	chr9:108457800-108476200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:108457800-108492200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:108458000-108459600	Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr9:108458000-108468400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr9:108458000-108472400	Weak transcription	HSMM	muscle
9	chr9:108458000-108473000	Weak transcription	Left Ventricle	heart
10	chr9:108458000-108475200	Weak transcription	Fetal Thymus	thymus
11	chr9:108458000-108475600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr9:108458000-108475600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr9:108458000-108475600	Weak transcription	Thymus	Thymus
14	chr9:108458000-108476000	Weak transcription	Ovary	ovary
15	chr9:108458000-108479200	Weak transcription	Fetal Brain Male	brain
16	chr9:108458000-108497800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr9:108458200-108459400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr9:108458200-108459600	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr9:108458200-108459600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr9:108458200-108462400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr9:108458200-108462400	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr9:108458200-108462600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr9:108458200-108468400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr9:108458200-108468600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr9:108458200-108470600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr9:108458200-108476400	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr9:108458200-108478800	Weak transcription	Brain Hippocampus Middle	brain
28	chr9:108458200-108480800	Weak transcription	Brain Angular Gyrus	brain
29	chr9:108458200-108491400	Weak transcription	HSMMtube	muscle
30	chr9:108458200-108491600	Weak transcription	Brain Anterior Caudate	brain
31	chr9:108458200-108495400	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr9:108458200-108497000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:108458400-108459400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr9:108458400-108460600	Enhancers	HepG2	liver
35	chr9:108458400-108461800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr9:108458400-108463000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr9:108458400-108463000	Weak transcription	Primary B cells from peripheral blood	blood
38	chr9:108458400-108470200	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr9:108458400-108470400	Weak transcription	Liver	Liver
40	chr9:108458600-108459400	Enhancers	GM12878-XiMat	blood
41	chr9:108458600-108459600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr9:108458600-108459800	Flanking Active TSS	K562	blood
43	chr9:108458600-108460000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr9:108458600-108472600	Weak transcription	Duodenum Mucosa	Duodenum
45	chr9:108458800-108459600	Enhancers	Fetal Intestine Large	intestine
46	chr9:108458800-108462000	Weak transcription	Hela-S3	cervix
47	chr9:108458800-108470600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr9:108459000-108459800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr9:108459000-108460600	Enhancers	Fetal Intestine Small	intestine
50	chr9:108459000-108461200	Weak transcription	Primary hematopoietic stem cells	blood

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