Variant report
| Variant | rs2901341 |
|---|---|
| Chromosome Location | chr1:170157383-170157384 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs10800502 | 0.81[ASN][1000 genomes] |
| rs10800505 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10800506 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10919309 | 0.81[ASN][1000 genomes] |
| rs10919312 | 0.81[ASN][1000 genomes] |
| rs10919321 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10919322 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10919324 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11484822 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11484824 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12039113 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12569092 | 0.81[ASN][1000 genomes] |
| rs12751063 | 0.81[ASN][1000 genomes] |
| rs35081369 | 0.81[ASN][1000 genomes] |
| rs477960 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs480667 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs533666 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs550575 | 0.81[ASN][1000 genomes] |
| rs561326 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs562931 | 0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs569357 | 0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6427234 | 0.81[ASN][1000 genomes] |
| rs6427235 | 0.81[ASN][1000 genomes] |
| rs6669514 | 0.81[ASN][1000 genomes] |
| rs7544677 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1014033 | chr1:169968488-170453021 | Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv535200 | chr1:169968488-170453021 | Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv999310 | chr1:170065943-170223350 | Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:170154400-170160200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
