Variant report

Variant	rs2903106
Chromosome Location	chr16:75655979-75655980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:75655020..75658877-chr16:75680481..75684905,8	MCF-7	breast:
2	chr16:75496396..75498894-chr16:75652662..75656672,3	MCF-7	breast:
3	chr16:75589724..75591808-chr16:75655719..75657999,2	MCF-7	breast:
4	chr16:75653410..75664044-chr16:75674901..75683254,27	MCF-7	breast:
5	chr16:75635717..75638506-chr16:75654475..75657293,3	MCF-7	breast:
6	chr16:75467060..75468632-chr16:75654952..75657400,2	K562	blood:
7	chr16:75589928..75591467-chr16:75655261..75657250,2	K562	blood:
8	chr16:75465910..75469192-chr16:75654368..75658890,6	K562	blood:
9	chr16:75654016..75659144-chr16:75660095..75666421,8	K562	blood:
10	chr16:75598745..75600890-chr16:75655383..75657208,2	MCF-7	breast:
11	chr16:75587027..75591762-chr16:75651045..75658145,7	K562	blood:
12	chr16:75655386..75658646-chr16:75660355..75663332,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000205084	Chromatin interaction
ENSG00000166822	Chromatin interaction
ENSG00000166848	Chromatin interaction
ENSG00000065427	Chromatin interaction
ENSG00000153774	Chromatin interaction
ENSG00000065457	Chromatin interaction
ENSG00000261717	Chromatin interaction
ENSG00000034713	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11149842	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12596857	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16940253	0.83[ASN][1000 genomes]
rs16940467	0.89[ASN][1000 genomes]
rs16941533	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1865493	0.91[AMR][1000 genomes]
rs1979717	0.83[ASN][1000 genomes]
rs2082751	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2454867	0.82[AMR][1000 genomes]
rs2738792	0.83[AMR][1000 genomes]
rs3743605	0.84[ASN][1000 genomes]
rs3784929	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41505349	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4887833	0.83[ASN][1000 genomes]
rs5010692	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57252551	0.85[ASN][1000 genomes]
rs57396453	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58508930	0.82[ASN][1000 genomes]
rs59907199	0.82[ASN][1000 genomes]
rs61078946	0.82[ASN][1000 genomes]
rs7186966	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73615030	0.90[ASN][1000 genomes]
rs74027438	0.82[ASN][1000 genomes]
rs8051241	0.90[ASN][1000 genomes]
rs8051713	0.83[ASN][1000 genomes]
rs8060972	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8061505	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs963820	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9934159	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv532562	chr16:75614947-76371158	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1062010	chr16:75628562-75825725	Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv1064880	chr16:75628562-75895699	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv542960	chr16:75628562-75895699	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv1065543	chr16:75631306-75800170	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75647000-75656200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr16:75648400-75656000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr16:75651200-75656000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr16:75651400-75656000	Weak transcription	Fetal Kidney	kidney
5	chr16:75651400-75656200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr16:75651600-75656200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr16:75652000-75656000	Weak transcription	Colonic Mucosa	Colon
8	chr16:75653000-75656000	Weak transcription	NHDF-Ad	bronchial
9	chr16:75653200-75656200	Weak transcription	Aorta	Aorta
10	chr16:75654000-75656000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr16:75654000-75656200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr16:75654200-75656200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr16:75654200-75656200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr16:75654400-75656000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr16:75654400-75656000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr16:75654400-75656000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr16:75654400-75656000	Enhancers	Fetal Heart	heart
18	chr16:75654400-75656000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr16:75654400-75656200	Weak transcription	Fetal Lung	lung
20	chr16:75654400-75656400	Weak transcription	Ovary	ovary
21	chr16:75654600-75656000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr16:75654600-75656000	Enhancers	Duodenum Smooth Muscle	Duodenum
23	chr16:75654600-75656000	Weak transcription	Lung	lung
24	chr16:75654600-75656000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr16:75654600-75656200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr16:75654600-75656200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr16:75654600-75656200	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr16:75654600-75656200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr16:75654600-75656200	Enhancers	Colon Smooth Muscle	Colon
30	chr16:75654600-75656200	Weak transcription	Pancreas	Pancrea
31	chr16:75654600-75656400	Enhancers	Primary B cells from peripheral blood	blood
32	chr16:75654600-75656400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr16:75654800-75656000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr16:75654800-75656000	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr16:75654800-75656000	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr16:75654800-75656000	Enhancers	Brain Germinal Matrix	brain
37	chr16:75654800-75656000	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr16:75654800-75656000	Weak transcription	Right Atrium	heart
39	chr16:75654800-75656200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr16:75654800-75656200	Enhancers	Brain Anterior Caudate	brain
41	chr16:75654800-75656200	Enhancers	Brain Cingulate Gyrus	brain
42	chr16:75654800-75656200	Enhancers	Fetal Muscle Leg	muscle
43	chr16:75654800-75656200	Weak transcription	Gastric	stomach
44	chr16:75654800-75656400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr16:75654800-75656400	Enhancers	Placenta	Placenta
46	chr16:75655000-75656000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr16:75655000-75656000	Enhancers	Adipose Nuclei	Adipose
48	chr16:75655000-75656000	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr16:75655000-75656000	Enhancers	HSMM	muscle
50	chr16:75655000-75656000	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links