Variant report

Variant	rs2903250
Chromosome Location	chr3:118649060-118649061
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1468738	0.84[CEU][hapmap];0.89[JPT][hapmap];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2110365	0.83[GIH][hapmap];0.93[JPT][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4687833	0.94[CEU][hapmap];0.84[CHB][hapmap];0.84[CHD][hapmap];0.83[GIH][hapmap];0.93[JPT][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62275716	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9818140	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118619800-118651400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr3:118620200-118663200	Weak transcription	Pancreas	Pancrea
3	chr3:118642800-118651400	Weak transcription	Brain Angular Gyrus	brain
4	chr3:118643200-118651600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:118645200-118651200	Weak transcription	Brain Substantia Nigra	brain
6	chr3:118645200-118661600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:118645400-118651400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr3:118645400-118652000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr3:118645600-118649200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:118645800-118661600	Weak transcription	Left Ventricle	heart
11	chr3:118647600-118651000	Weak transcription	Brain Hippocampus Middle	brain
12	chr3:118647600-118651600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:118647600-118661000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr3:118648000-118651800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr3:118648400-118649200	Strong transcription	Ovary	ovary
16	chr3:118649000-118649200	Enhancers	Esophagus	oesophagus
17	chr3:118649000-118650800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:118649000-118651200	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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