Variant report

No.	Distal block	Cell Line	Cell type
1	chr17:56735085..56736750-chr20:52671034..52672707,2	MCF-7	breast:
2	chr20:52638922..52641694-chr20:52671102..52673075,2	MCF-7	breast:
3	chr17:56707459..56709744-chr20:52669878..52671451,2	MCF-7	breast:
4	chr17:56736044..56738825-chr20:52668683..52672447,3	MCF-7	breast:
5	chr17:56708938..56711128-chr20:52668141..52671621,3	MCF-7	breast:
6	chr20:52666267..52667791-chr20:52670697..52672738,2	K562	blood:

Variant related genes	Relation type
ENSG00000202077	Chromatin interaction
ENSG00000212195	Chromatin interaction

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1034843	0.83[AMR][1000 genomes]
rs158544	0.92[JPT][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs158551	1.00[YRI][hapmap]
rs16998745	1.00[YRI][hapmap]
rs208364	0.83[AMR][1000 genomes]
rs208372	0.83[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs208373	0.83[JPT][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs208375	0.81[JPT][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs208386	1.00[YRI][hapmap]
rs208392	1.00[ASW][hapmap]
rs2276492	1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs2276508	0.83[AMR][1000 genomes]
rs2276511	0.83[AMR][1000 genomes]
rs2276512	1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs2299727	0.83[AMR][1000 genomes]
rs2299733	0.83[AMR][1000 genomes]
rs290389	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs290425	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs290426	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs290461	1.00[YRI][hapmap]
rs290469	1.00[YRI][hapmap]
rs290470	1.00[YRI][hapmap]
rs36030456	0.83[AMR][1000 genomes]
rs458739	1.00[YRI][hapmap]
rs459454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4811488	0.83[AMR][1000 genomes]
rs6091796	0.83[AMR][1000 genomes]
rs6097694	0.83[AMR][1000 genomes]
rs6097697	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34060	chr20:52251863-52702186	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	296 gene(s)	inside rSNPs	diseases
2	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
3	nsv3419	chr20:52637581-52672115	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52641600-52676400	Weak transcription	Stomach Mucosa	stomach
2	chr20:52645200-52682200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr20:52666400-52673000	Strong transcription	Rectal Mucosa Donor 29	rectum
4	chr20:52666600-52675200	Strong transcription	Rectal Mucosa Donor 31	rectum
5	chr20:52669400-52681800	Weak transcription	Gastric	stomach

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