Variant report

Variant	rs2906265
Chromosome Location	chr7:70879992-70879993
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2906270	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2906276	0.87[ASN][1000 genomes]
rs2960887	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2960888	0.93[ASN][1000 genomes]
rs56723528	0.83[EUR][1000 genomes]
rs61737661	0.93[ASN][1000 genomes]
rs62462212	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70853400-70885800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:70867600-70881000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr7:70868200-70881800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:70868200-70892400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:70868800-70882200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:70869200-70880800	Weak transcription	Ovary	ovary
7	chr7:70870200-70880600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:70870400-70880600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:70870400-70880800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:70870400-70880800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:70874200-70892600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:70874600-70880800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:70874800-70889000	Weak transcription	HSMMtube	muscle
14	chr7:70875000-70880600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr7:70875000-70880600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr7:70876000-70882600	Weak transcription	Fetal Lung	lung
17	chr7:70877000-70881200	Weak transcription	Fetal Muscle Leg	muscle
18	chr7:70878200-70885600	Weak transcription	Fetal Stomach	stomach
19	chr7:70878600-70885400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr7:70879400-70881000	Enhancers	Fetal Heart	heart
21	chr7:70879400-70881800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:70879400-70886200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr7:70879400-70899000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr7:70879600-70880000	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr7:70879600-70880000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr7:70879800-70880000	Weak transcription	Left Ventricle	heart
27	chr7:70879800-70880000	Enhancers	Right Atrium	heart
28	chr7:70879800-70880000	Enhancers	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links