Variant report

Variant	rs2906657
Chromosome Location	chr7:99984089-99984090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99983658..99989026-chr7:100025931..100030707,8	MCF-7	breast:
2	chr7:99983162..99986044-chr7:99986515..99990013,3	MCF-7	breast:
3	chr7:99980237..99981770-chr7:99982971..99984554,2	K562	blood:
4	chr7:99982614..99984718-chr7:100006163..100007904,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146834	Chromatin interaction
ENSG00000078487	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1476679	0.86[ASN][1000 genomes]
rs34995835	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350965	chr7:99747460-100146105	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
2	esv1829095	chr7:99814675-100494084	Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	393 gene(s)	inside rSNPs	diseases
3	nsv831071	chr7:99918025-100113413	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	287 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2906657	PILRB	cis	Adipose Subcutaneous	GTEx
rs2906657	PVRIG2P	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99940800-100014600	Weak transcription	Right Atrium	heart
2	chr7:99960400-99984800	Weak transcription	Pancreas	Pancrea
3	chr7:99960600-99985200	Weak transcription	Aorta	Aorta
4	chr7:99962400-100020600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr7:99966400-99998000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:99972200-99984600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr7:99972600-99996000	Weak transcription	Brain Hippocampus Middle	brain
8	chr7:99972800-99987400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:99972800-99994800	Weak transcription	Spleen	Spleen
10	chr7:99973000-99999400	Weak transcription	Brain Anterior Caudate	brain
11	chr7:99973600-99987400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr7:99976200-99998200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:99977000-99989800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:99980600-99985600	Genic enhancers	Primary monocytes fromperipheralblood	blood
15	chr7:99981800-99987400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr7:99982600-99984200	Genic enhancers	Monocytes-CD14+_RO01746	blood
17	chr7:99982600-99985000	Weak transcription	Adipose Nuclei	Adipose
18	chr7:99982800-99984600	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr7:99982800-99987400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr7:99983200-99987200	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr7:99984000-99984600	Weak transcription	GM12878-XiMat	blood

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