Variant report

Variant	rs2906864
Chromosome Location	chr12:68403098-68403099
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11176999	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12298990	0.95[EUR][1000 genomes]
rs2079583	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2906855	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2906858	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3014999	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs740050	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7975682	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411149	chr12:68066948-68435533	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv975509	chr12:68382193-68405026	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68386400-68404200	Weak transcription	Primary B cells from cord blood	blood
2	chr12:68386800-68404600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr12:68391400-68405400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr12:68392400-68404600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr12:68392400-68404800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr12:68392600-68413800	Weak transcription	Primary T cells from cord blood	blood
7	chr12:68392800-68405200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr12:68393000-68405000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr12:68395800-68404400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr12:68397200-68405400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr12:68398400-68405400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:68398400-68422200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr12:68399200-68404800	Weak transcription	Primary B cells from peripheral blood	blood
14	chr12:68401000-68405400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr12:68401200-68405400	Weak transcription	HSMMtube	muscle
16	chr12:68401600-68404200	Weak transcription	Fetal Intestine Small	intestine
17	chr12:68401600-68405400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr12:68401800-68405200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr12:68402000-68403800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr12:68402000-68405400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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