Variant report

Variant	rs2907083
Chromosome Location	chr5:12300761-12300762
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:12299671..12303215-chr5:12303508..12306059,3	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10035620	0.82[ASN][1000 genomes]
rs1006242	0.82[ASN][1000 genomes]
rs1006243	0.94[ASN][1000 genomes]
rs10065719	0.90[ASN][1000 genomes]
rs10073372	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10073609	0.82[ASN][1000 genomes]
rs10075629	0.82[ASN][1000 genomes]
rs11133709	0.82[ASN][1000 genomes]
rs1159451	0.82[ASN][1000 genomes]
rs12651993	0.82[ASN][1000 genomes]
rs13183605	0.81[ASN][1000 genomes]
rs1476767	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2024136	0.82[ASN][1000 genomes]
rs2024138	0.82[ASN][1000 genomes]
rs2052034	0.82[ASN][1000 genomes]
rs2108883	0.82[ASN][1000 genomes]
rs2108884	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2191009	0.90[ASN][1000 genomes]
rs2191011	0.91[ASN][1000 genomes]
rs2215203	0.91[ASN][1000 genomes]
rs2215204	0.89[ASN][1000 genomes]
rs2215206	0.94[ASN][1000 genomes]
rs2215207	0.91[ASN][1000 genomes]
rs2400143	0.94[ASN][1000 genomes]
rs2400152	0.90[ASN][1000 genomes]
rs2895619	0.90[ASN][1000 genomes]
rs2966903	0.82[ASN][1000 genomes]
rs4309974	0.83[ASN][1000 genomes]
rs4370272	0.90[ASN][1000 genomes]
rs4431335	0.91[ASN][1000 genomes]
rs4557409	0.83[ASN][1000 genomes]
rs4557410	0.82[ASN][1000 genomes]
rs4701937	0.94[ASN][1000 genomes]
rs4702865	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6860849	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6866137	0.90[ASN][1000 genomes]
rs6886130	0.84[ASN][1000 genomes]
rs6891532	0.94[ASN][1000 genomes]
rs7701646	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9312797	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9312800	0.91[ASN][1000 genomes]
rs9632429	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016098	chr5:12042741-12310988	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1025096	chr5:12049731-12778382	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv537660	chr5:12049731-12778382	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv880704	chr5:12132401-12338203	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv880364	chr5:12153033-12330841	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1031406	chr5:12231297-12305842	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1030580	chr5:12254774-12364629	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv527153	chr5:12261596-12310717	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv520904	chr5:12263215-12310717	ZNF genes & repeats Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1015676	chr5:12276531-12540904	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv427711	chr5:12285375-12747819	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv1026529	chr5:12285675-12387812	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1017000	chr5:12285675-12451819	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv537664	chr5:12285675-12451819	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:12300400-12304600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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