Variant report

Variant	rs2907268
Chromosome Location	chr17:15312858-15312859
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:15160238..15161489-chr17:15311841..15313089,7	MCF-7	breast:
2	chr17:15163790..15164875-chr17:15311861..15312884,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109099	Chromatin interaction
ENSG00000265445	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv427990	chr17:15154329-15434020	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv907703	chr17:15199907-15370701	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv949172	chr17:15206970-15416808	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv1055677	chr17:15294011-15561130	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15306600-15315200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr17:15308000-15313000	Weak transcription	Brain Anterior Caudate	brain
3	chr17:15308400-15317400	Weak transcription	Psoas Muscle	Psoas
4	chr17:15308600-15313000	Weak transcription	Lung	lung
5	chr17:15308600-15314200	Weak transcription	Esophagus	oesophagus
6	chr17:15308600-15314200	Weak transcription	Small Intestine	intestine
7	chr17:15308600-15314800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr17:15308600-15314800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr17:15308800-15315000	Weak transcription	Fetal Intestine Small	intestine
10	chr17:15310000-15315800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr17:15310000-15317600	Weak transcription	Right Ventricle	heart
12	chr17:15310000-15320400	Weak transcription	Spleen	Spleen
13	chr17:15310000-15328200	Weak transcription	Right Atrium	heart
14	chr17:15310600-15313200	Weak transcription	Fetal Kidney	kidney
15	chr17:15311600-15313800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr17:15312200-15313200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr17:15312200-15313200	Enhancers	Fetal Muscle Trunk	muscle
18	chr17:15312200-15313200	Enhancers	Left Ventricle	heart
19	chr17:15312200-15313800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr17:15312200-15316800	Enhancers	Placenta	Placenta
21	chr17:15312200-15317200	Enhancers	Fetal Stomach	stomach
22	chr17:15312200-15319800	Enhancers	Fetal Muscle Leg	muscle
23	chr17:15312400-15313000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr17:15312400-15313200	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr17:15312400-15313600	Enhancers	Brain Cingulate Gyrus	brain
26	chr17:15312400-15313600	Flanking Active TSS	HMEC	breast
27	chr17:15312400-15313600	Flanking Active TSS	Osteobl	bone
28	chr17:15312400-15313800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr17:15312400-15313800	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr17:15312400-15314200	Weak transcription	Duodenum Mucosa	Duodenum
31	chr17:15312600-15313000	Enhancers	Rectal Smooth Muscle	rectum
32	chr17:15312600-15313000	Flanking Active TSS	NHEK	skin
33	chr17:15312600-15313200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr17:15312600-15313200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
35	chr17:15312600-15313200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr17:15312600-15313200	Flanking Active TSS	Adipose Nuclei	Adipose
37	chr17:15312600-15313200	Flanking Active TSS	Brain Hippocampus Middle	brain
38	chr17:15312600-15313200	Flanking Active TSS	Brain Substantia Nigra	brain
39	chr17:15312600-15313200	Enhancers	Colonic Mucosa	Colon
40	chr17:15312600-15313200	Flanking Active TSS	HSMM	muscle
41	chr17:15312600-15313200	Flanking Active TSS	NHDF-Ad	bronchial
42	chr17:15312600-15313200	Flanking Active TSS	NHLF	lung
43	chr17:15312600-15313600	Enhancers	Fetal Thymus	thymus
44	chr17:15312600-15313800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr17:15312600-15313800	Enhancers	Fetal Lung	lung
46	chr17:15312800-15313000	Active TSS	Aorta	Aorta
47	chr17:15312800-15313000	Active TSS	Skeletal Muscle Female	skeletal muscle
48	chr17:15312800-15313000	Active TSS	Stomach Smooth Muscle	stomach
49	chr17:15312800-15313200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr17:15312800-15313200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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