Variant report

Variant	rs2909292
Chromosome Location	chr9:73615374-73615375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs13285838	0.86[ASN][1000 genomes]
rs28477145	0.95[ASN][1000 genomes]
rs7873024	0.86[ASN][1000 genomes]
rs918225	0.86[ASN][1000 genomes]
rs972387	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430072	chr9:73509677-73640530	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1042806	chr9:73613885-73686104	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2909292	C9orf85	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73610200-73616600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr9:73610600-73619000	Weak transcription	Brain Substantia Nigra	brain
3	chr9:73613800-73615400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr9:73614800-73615400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr9:73614800-73618800	Weak transcription	Aorta	Aorta
6	chr9:73615000-73619000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr9:73615000-73620000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:73615200-73615400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:73615200-73616600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:73615200-73616600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:73615200-73618800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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