Variant report

Variant	rs2909815
Chromosome Location	chr5:116075842-116075843
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs26670	0.85[ASN][1000 genomes]
rs26671	0.85[ASN][1000 genomes]
rs27544	0.86[ASN][1000 genomes]
rs28035	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2909816	0.80[ASN][1000 genomes]
rs2909818	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2933594	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2933595	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2933596	0.80[ASN][1000 genomes]
rs2933597	0.87[ASN][1000 genomes]
rs2964685	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2964686	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2964687	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2964688	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2964689	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2964690	0.88[ASN][1000 genomes]
rs35210657	0.85[ASN][1000 genomes]
rs455408	0.85[ASN][1000 genomes]
rs878401	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830456	chr5:115969066-116170718	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv527974	chr5:115987168-116303678	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv462403	chr5:115994775-116284378	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv599485	chr5:115994775-116284378	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1030056	chr5:116008971-116278725	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1033140	chr5:116035131-116314673	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116068400-116076600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr5:116070600-116076200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:116070600-116076600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:116073400-116076200	Enhancers	Lung	lung
5	chr5:116073800-116076400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr5:116074000-116076400	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr5:116074200-116076200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
8	chr5:116074200-116076400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:116074400-116076000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:116074600-116076000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:116074600-116076000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr5:116074600-116076200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:116075000-116076000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr5:116075000-116076000	Weak transcription	Spleen	Spleen
15	chr5:116075600-116076400	Enhancers	HSMM	muscle
16	chr5:116075800-116076000	Enhancers	Fetal Muscle Trunk	muscle
17	chr5:116075800-116077400	Enhancers	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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