Variant report

Variant	rs2909823
Chromosome Location	chr5:116064934-116064935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1000258	0.99[ASN][1000 genomes]
rs1027291	0.89[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs1027292	0.95[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap]
rs2087871	0.88[ASN][1000 genomes]
rs2087873	0.88[ASN][1000 genomes]
rs2131460	0.88[ASN][1000 genomes]
rs2909824	0.88[ASN][1000 genomes]
rs2909825	0.99[ASN][1000 genomes]
rs2909826	0.88[ASN][1000 genomes]
rs2933624	0.81[ASN][1000 genomes]
rs2933627	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs2933628	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs2933630	0.95[CHB][hapmap];0.83[CHD][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs2933633	0.90[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2964694	0.99[ASN][1000 genomes]
rs2964698	0.88[ASN][1000 genomes]
rs2964699	0.87[ASN][1000 genomes]
rs2964701	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs2964702	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs7707373	0.86[ASN][1000 genomes]
rs872411	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763490	chr5:115918339-116138525	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830456	chr5:115969066-116170718	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv527974	chr5:115987168-116303678	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv462403	chr5:115994775-116284378	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv599485	chr5:115994775-116284378	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1030056	chr5:116008971-116278725	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1033140	chr5:116035131-116314673	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116061400-116068200	Enhancers	Fetal Heart	heart
2	chr5:116062000-116067400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:116062600-116069200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:116063600-116069600	Weak transcription	Right Ventricle	heart
5	chr5:116064400-116065000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:116064800-116065600	Enhancers	Left Ventricle	heart
7	chr5:116064800-116067200	Weak transcription	Fetal Lung	lung

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