Variant report

Variant	rs2910650
Chromosome Location	chr5:97435063-97435064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12518726	0.83[ASN][1000 genomes]
rs1421791	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1421794	0.83[ASN][1000 genomes]
rs1421795	0.83[ASN][1000 genomes]
rs257251	1.00[ASN][1000 genomes]
rs257253	1.00[ASN][1000 genomes]
rs34280649	0.83[ASN][1000 genomes]
rs34946649	0.83[ASN][1000 genomes]
rs36112458	0.83[ASN][1000 genomes]
rs365567	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs371580	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs376807	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4349743	0.83[ASN][1000 genomes]
rs4388230	0.83[ASN][1000 genomes]
rs4441898	0.83[ASN][1000 genomes]
rs4487514	0.83[ASN][1000 genomes]
rs4616925	0.83[ASN][1000 genomes]
rs4631201	0.83[ASN][1000 genomes]
rs62366770	0.83[ASN][1000 genomes]
rs6889514	0.83[ASN][1000 genomes]
rs958375	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882404	chr5:97281641-97638743	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031989	chr5:97333291-97524353	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1034472	chr5:97357264-97523965	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1019049	chr5:97373215-97442582	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS	lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2758004	chr5:97395508-97550089	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv2759357	chr5:97395508-97616089	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv599076	chr5:97423476-97478555	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv32866	chr5:97424721-97463865	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97432200-97440800	Weak transcription	HSMM	muscle
2	chr5:97432400-97443400	Weak transcription	NH-A	brain
3	chr5:97432600-97435200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:97432600-97435200	Weak transcription	HMEC	breast
5	chr5:97432600-97435600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:97432600-97437200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr5:97432800-97435200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr5:97432800-97435200	Weak transcription	NHDF-Ad	bronchial
9	chr5:97432800-97439600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:97432800-97440600	Weak transcription	NHLF	lung
11	chr5:97432800-97441400	Weak transcription	Osteobl	bone
12	chr5:97434000-97435200	Weak transcription	NHEK	skin
13	chr5:97434000-97435600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr5:97434000-97435600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:97434200-97435200	Enhancers	HUVEC	blood vessel
16	chr5:97434400-97435200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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