Variant report

Variant	rs2910702
Chromosome Location	chr5:37828304-37828305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:37828282..37831109-chr5:37832662..37834431,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1862574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2910709	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs2910800	0.89[ASN][1000 genomes]
rs2972934	0.90[ASN][1000 genomes]
rs2973038	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2973043	0.88[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2973048	0.83[AFR][1000 genomes]
rs2973049	0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs2973059	0.83[ASN][1000 genomes]
rs2973060	0.90[ASN][1000 genomes]
rs3096140	0.95[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs3749692	0.80[CHB][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37815800-37830600	Weak transcription	Ovary	ovary
2	chr5:37816200-37834000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:37816800-37830600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr5:37816800-37831600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:37817000-37831800	Weak transcription	NH-A	brain
6	chr5:37817400-37831800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:37818200-37834400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr5:37820200-37832000	Strong transcription	NHDF-Ad	bronchial
9	chr5:37822600-37834400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr5:37822800-37830600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr5:37824400-37832400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr5:37824800-37831600	Weak transcription	NHEK	skin
13	chr5:37825200-37829000	Weak transcription	Rectal Smooth Muscle	rectum
14	chr5:37825200-37831800	Weak transcription	NHLF	lung
15	chr5:37825600-37828400	Strong transcription	Fetal Stomach	stomach
16	chr5:37825800-37832000	Weak transcription	Fetal Kidney	kidney
17	chr5:37826000-37829400	Strong transcription	HSMMtube	muscle
18	chr5:37826800-37829400	Weak transcription	Colon Smooth Muscle	Colon
19	chr5:37827000-37828600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr5:37827000-37829400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr5:37827000-37830800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr5:37827000-37831800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr5:37827000-37832000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr5:37827200-37828600	Weak transcription	Osteobl	bone
25	chr5:37827200-37830200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr5:37827200-37831400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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