Variant report

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2910778	1.00[EUR][1000 genomes]
rs2910779	1.00[EUR][1000 genomes]
rs2910782	0.90[AMR][1000 genomes]
rs2914548	0.90[AMR][1000 genomes]
rs2920519	1.00[EUR][1000 genomes]
rs2937824	1.00[EUR][1000 genomes]
rs2950040	1.00[EUR][1000 genomes]
rs2950042	1.00[EUR][1000 genomes]
rs2950043	1.00[EUR][1000 genomes]
rs2950048	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2973362	1.00[EUR][1000 genomes]
rs2973404	1.00[EUR][1000 genomes]
rs4560581	1.00[EUR][1000 genomes]
rs58643068	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021142	chr5:89102893-89897826	Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv537804	chr5:89102893-89897826	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv917025	chr5:89208994-89855436	Enhancers Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv882361	chr5:89302715-89357159	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89343600-89353200	Weak transcription	Psoas Muscle	Psoas
2	chr5:89351200-89353200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:89351200-89353800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr5:89351200-89354000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr5:89351400-89353400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:89351600-89353200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr5:89351600-89353400	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:89351600-89353600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr5:89351800-89353200	Enhancers	Stomach Smooth Muscle	stomach
10	chr5:89351800-89353400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr5:89352000-89353400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr5:89352200-89353200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr5:89352200-89353200	Weak transcription	Fetal Muscle Leg	muscle
14	chr5:89352200-89353200	Weak transcription	Left Ventricle	heart
15	chr5:89352200-89353200	Weak transcription	NHDF-Ad	bronchial
16	chr5:89352200-89353400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr5:89352200-89353400	Enhancers	NH-A	brain
18	chr5:89352200-89353400	Enhancers	Osteobl	bone
19	chr5:89352600-89353800	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr5:89353000-89353400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell

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