Variant report

Variant	rs2912118
Chromosome Location	chr15:60212114-60212115
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12907231	0.96[AMR][1000 genomes]
rs2912117	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2970387	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv2760398	chr15:60208658-60243534	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1553	chr15:60209361-60234943	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60209600-60212600	Enhancers	Dnd41	blood
2	chr15:60209800-60212800	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr15:60210000-60212400	Enhancers	Primary T cells from cord blood	blood
4	chr15:60210600-60212800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr15:60211200-60212200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr15:60211200-60212400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr15:60211200-60212600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:60211200-60212600	Enhancers	NH-A	brain
9	chr15:60211400-60212200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:60211400-60212200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr15:60211400-60212200	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr15:60211400-60212200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr15:60211400-60212400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:60211400-60212600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:60211400-60212600	Enhancers	HMEC	breast
16	chr15:60211400-60212600	Enhancers	NHEK	skin
17	chr15:60211400-60212800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:60211600-60212200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:60211600-60212200	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr15:60211600-60212200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr15:60211600-60212400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr15:60211600-60212400	Enhancers	Osteobl	bone
23	chr15:60211600-60223000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr15:60211800-60212200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr15:60211800-60212400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr15:60211800-60212800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr15:60212000-60212400	Enhancers	GM12878-XiMat	blood
28	chr15:60212000-60212600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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