Variant report

Variant	rs2912350
Chromosome Location	chr7:31971534-31971535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2912348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2912368	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2929661	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2929667	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2958300	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35779704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869155	chr7:31854796-32417025	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:31963000-31974800	Weak transcription	Ovary	ovary
2	chr7:31964600-31974600	Weak transcription	Brain Substantia Nigra	brain
3	chr7:31964800-31974000	Weak transcription	Brain Hippocampus Middle	brain
4	chr7:31966200-31973400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:31966400-31973200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:31966800-31976000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:31966800-31979800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:31967000-31973200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:31967000-31973400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr7:31967000-31974800	Weak transcription	Left Ventricle	heart
11	chr7:31971000-31974800	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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