Variant report

Variant	rs2912502
Chromosome Location	chr8:69944809-69944810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2912498	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2912500	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69941000-69951600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:69941800-69946000	Weak transcription	Aorta	Aorta
3	chr8:69942000-69947200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:69942600-69947800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr8:69942800-69948000	Enhancers	Osteobl	bone
6	chr8:69943000-69945800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:69943200-69945400	Weak transcription	Fetal Stomach	stomach
8	chr8:69943200-69945800	Weak transcription	Colon Smooth Muscle	Colon
9	chr8:69943800-69945600	Weak transcription	Fetal Lung	lung
10	chr8:69943800-69946000	Weak transcription	NHLF	lung
11	chr8:69944000-69945400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:69944000-69953600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:69944200-69945800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:69944600-69945800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:69944600-69945800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:69944600-69945800	Weak transcription	HSMM	muscle
17	chr8:69944600-69945800	Weak transcription	NHDF-Ad	bronchial
18	chr8:69944600-69946000	Weak transcription	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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