Variant report

Variant	rs2912503
Chromosome Location	chr8:69946756-69946757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10096502	0.88[EUR][1000 genomes]
rs10957456	0.88[EUR][1000 genomes]
rs12544142	0.88[EUR][1000 genomes]
rs12680675	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1343725	0.88[EUR][1000 genomes]
rs2912525	0.87[CEU][hapmap];0.85[GIH][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2981069	0.87[CEU][hapmap];0.85[GIH][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs2981071	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4349991	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs5015160	0.88[EUR][1000 genomes]
rs6985889	0.88[EUR][1000 genomes]
rs7010538	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69941000-69951600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:69942000-69947200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:69942600-69947800	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:69942800-69948000	Enhancers	Osteobl	bone
5	chr8:69944000-69953600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:69945400-69946800	Enhancers	Fetal Stomach	stomach
7	chr8:69945800-69946800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:69945800-69946800	Enhancers	Placenta Amnion	Placenta Amnion
9	chr8:69945800-69947200	Enhancers	Colon Smooth Muscle	Colon
10	chr8:69945800-69947400	Enhancers	Hela-S3	cervix
11	chr8:69946000-69947200	Enhancers	NHLF	lung
12	chr8:69946200-69946800	Weak transcription	HSMM	muscle
13	chr8:69946200-69947600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:69946200-69951600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:69946200-69951600	Weak transcription	NHDF-Ad	bronchial
16	chr8:69946400-69947400	Enhancers	Brain Germinal Matrix	brain
17	chr8:69946600-69955400	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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