Variant report

Variant	rs2915180
Chromosome Location	chr11:34871556-34871557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:34870702..34874791-chr11:34878120..34882301,4	K562	blood:
2	chr11:34846502..34848843-chr11:34871445..34873663,2	K562	blood:
3	chr11:34870750..34872354-chr11:34883543..34885420,2	K562	blood:
4	chr11:34870702..34872577-chr11:34878120..34880872,2	K562	blood:
5	chr11:34865938..34868708-chr11:34870452..34873276,2	K562	blood:
6	chr11:34863977..34866462-chr11:34870377..34873238,2	MCF-7	breast:

Extended variants
information (count: 112 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs1036070	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1117051	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1117445	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1326944	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1326945	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1396880	0.89[ASN][1000 genomes]
rs1396881	0.89[ASN][1000 genomes]
rs1409717	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1509662	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1549789	0.89[ASN][1000 genomes]
rs1549791	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1553757	0.89[ASN][1000 genomes]
rs1553758	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553759	0.82[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1553760	0.82[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1553761	0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1553762	0.82[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1828298	0.89[ASN][1000 genomes]
rs1858166	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1960524	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1991648	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2031686	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2033355	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2033357	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2033358	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2033360	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2082204	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2116090	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2147341	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2163374	0.89[ASN][1000 genomes]
rs2163375	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2421743	0.81[ASN][1000 genomes]
rs2915177	0.81[ASN][1000 genomes]
rs2915178	0.82[ASN][1000 genomes]
rs2915179	0.89[ASN][1000 genomes]
rs2915189	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2915191	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2915197	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2915198	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2915201	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2915202	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2915203	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2915208	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2915214	0.84[CEU][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2915217	0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2915218	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2915225	0.85[CEU][hapmap];0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2915226	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2915228	0.85[ASN][1000 genomes]
rs2915230	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2915231	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2915232	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2915233	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2915235	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2915237	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2915238	0.81[ASN][1000 genomes]
rs2941040	0.82[ASN][1000 genomes]
rs2941041	0.84[ASN][1000 genomes]
rs2941042	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2941043	0.89[ASN][1000 genomes]
rs2941044	0.84[ASN][1000 genomes]
rs2941045	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2941050	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2941052	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2941055	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2941057	0.81[ASN][1000 genomes]
rs2941058	0.81[ASN][1000 genomes]
rs2941059	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2941060	0.87[ASN][1000 genomes]
rs2941061	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2956074	0.82[ASN][1000 genomes]
rs2956076	0.89[ASN][1000 genomes]
rs2956077	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2956078	0.80[ASN][1000 genomes]
rs2956079	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2956080	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2956084	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2956095	0.81[CHB][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2956097	0.92[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2956098	0.82[CHB][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2956101	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2956109	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2956112	0.91[CEU][hapmap];0.89[CHB][hapmap]
rs2956116	0.84[CEU][hapmap];0.82[CHB][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2956118	0.81[CEU][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2956119	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2956120	0.91[CEU][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2956125	0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2956126	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2956128	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2985150	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2985382	0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2985385	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2986403	0.86[CEU][hapmap];0.86[AMR][1000 genomes]
rs2986405	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2986406	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2986407	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2986408	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2986412	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2986413	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2986415	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2986417	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2986421	0.85[CEU][hapmap];0.82[CHB][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs496653	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs520658	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs724714	0.84[CEU][hapmap];0.82[CHB][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs891550	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs919554	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs925289	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs984690	0.84[CEU][hapmap];0.82[CHB][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2915180	APIP	Cis_1M	lymphoblastoid	RTeQTL
rs2915180	APIP	cis	multi-tissue	Pritchard

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34859000-34909400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:34859400-34871800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:34869800-34871600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:34871200-34871600	Enhancers	Small Intestine	intestine
5	chr11:34871200-34872600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:34871200-34872800	Enhancers	Hela-S3	cervix
7	chr11:34871200-34873200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr11:34871400-34872000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr11:34871400-34872200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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