Variant report
| Variant | rs2915767 |
|---|---|
| Chromosome Location | chr10:118345726-118345727 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:118339537..118342263-chr10:118345087..118346616,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs11197734 | 0.89[EUR][1000 genomes] |
| rs11197742 | 1.00[GIH][hapmap];0.87[TSI][hapmap] |
| rs2070772 | 0.85[ASN][1000 genomes] |
| rs2915748 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2915749 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2915768 | 0.90[ASN][1000 genomes] |
| rs2915770 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2915772 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2915774 | 0.89[ASN][1000 genomes] |
| rs2915775 | 0.90[ASN][1000 genomes] |
| rs3010492 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3010493 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3010494 | 0.90[ASN][1000 genomes] |
| rs3010495 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3010496 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap] |
| rs3010503 | 0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs60325462 | 0.89[EUR][1000 genomes] |
| rs7898331 | 0.85[GIH][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3415357 | chr10:118254861-118383651 | Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
