Variant report

Variant	rs2916195
Chromosome Location	chr1:153330982-153330983
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:153327790..153331196-chr1:153389246..153391874,3	MCF-7	breast:
2	chr1:153329431..153332677-chr1:153411266..153413745,3	MCF-7	breast:
3	chr1:153327739..153331289-chr1:153432933..153435895,3	MCF-7	breast:
4	chr1:153320974..153341807-chr1:153456098..153486349,81	MCF-7	breast:
5	chr1:153318218..153321043-chr1:153328281..153331716,3	MCF-7	breast:
6	chr1:153326747..153345757-chr1:153352900..153372983,150	MCF-7	breast:
7	chr1:153329201..153331656-chr1:153387382..153389992,2	MCF-7	breast:
8	chr1:145381186..145383142-chr1:153329584..153331437,2	MCF-7	breast:
9	chr1:153329373..153332340-chr1:153432969..153437036,4	MCF-7	breast:
10	chr1:153330243..153332456-chr1:153649473..153651392,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000169418	Chromatin interaction
ENSG00000233396	Chromatin interaction
ENSG00000197364	Chromatin interaction
ENSG00000163218	Chromatin interaction
ENSG00000237008	Chromatin interaction
ENSG00000224784	Chromatin interaction
ENSG00000184330	Chromatin interaction
ENSG00000143556	Chromatin interaction
ENSG00000201558	Chromatin interaction
ENSG00000263841	Chromatin interaction
ENSG00000143546	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs3014868	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs3014871	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3014872	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs3014873	1.00[AMR][1000 genomes]
rs3124217	1.00[YRI][hapmap];0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010488	chr1:152901263-153670972	Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
2	nsv535171	chr1:152901263-153670972	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
3	nsv533877	chr1:152923645-153468131	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv1002705	chr1:153307852-153525589	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	152 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:153328800-153331200	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr1:153329400-153331000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr1:153329400-153331200	Enhancers	Hela-S3	cervix
4	chr1:153329600-153331000	Flanking Active TSS	Primary hematopoietic stem cells	blood
5	chr1:153329600-153331000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr1:153329600-153331000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr1:153329600-153331000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:153329600-153331000	Enhancers	Fetal Intestine Large	intestine
9	chr1:153329600-153331400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr1:153329600-153332000	Enhancers	Fetal Intestine Small	intestine
11	chr1:153329800-153331000	Enhancers	Primary B cells from peripheral blood	blood
12	chr1:153329800-153331000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr1:153329800-153331000	Enhancers	Liver	Liver
14	chr1:153329800-153331200	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr1:153329800-153331200	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr1:153329800-153331200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr1:153329800-153331200	Enhancers	Fetal Thymus	thymus
18	chr1:153330000-153332600	Active TSS	Esophagus	oesophagus
19	chr1:153330200-153331400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr1:153330200-153332200	Flanking Active TSS	Placenta	Placenta
21	chr1:153330200-153334800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:153330400-153331200	Active TSS	Brain Hippocampus Middle	brain
23	chr1:153330400-153331400	Active TSS	Left Ventricle	heart
24	chr1:153330400-153331800	Active TSS	Right Atrium	heart
25	chr1:153330400-153332000	Enhancers	Primary T cells fromperipheralblood	blood
26	chr1:153330400-153332000	Active TSS	Duodenum Smooth Muscle	Duodenum
27	chr1:153330400-153332600	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr1:153330400-153333200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr1:153330400-153339000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr1:153330600-153331000	Active TSS	Primary monocytes fromperipheralblood	blood
31	chr1:153330600-153331000	Flanking Bivalent TSS/Enh	Primary B cells from cord blood	blood
32	chr1:153330600-153331200	Bivalent Enhancer	Stomach Smooth Muscle	stomach
33	chr1:153330600-153331200	Enhancers	HMEC	breast
34	chr1:153330600-153332600	Enhancers	Adipose Nuclei	Adipose
35	chr1:153330800-153331000	Flanking Active TSS	Primary T cells from cord blood	blood
36	chr1:153330800-153331000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
37	chr1:153330800-153331200	Active TSS	Lung	lung
38	chr1:153330800-153331800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr1:153330800-153332000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr1:153330800-153332200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
41	chr1:153330800-153332600	Active TSS	Spleen	Spleen
42	chr1:153330800-153333800	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
43	chr1:153330800-153334000	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
44	chr1:153330800-153336600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr1:153330800-153336600	Weak transcription	NHEK	skin
46	chr1:153330800-153338200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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