Variant report

Variant	rs2917887
Chromosome Location	chr6:74533192-74533193
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1109492	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1437576	0.92[GIH][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs1437578	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1437579	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1437580	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351530	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3005518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3012519	0.92[GIH][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes]
rs3012541	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3012542	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3012543	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60325463	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61177408	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6925443	0.85[EUR][1000 genomes]
rs6930164	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023250	chr6:74189642-74605976	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
2	nsv538306	chr6:74189642-74605976	Strong transcription Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
3	nsv463154	chr6:74412048-74775904	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv603695	chr6:74412048-74775904	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74441400-74544400	Weak transcription	Aorta	Aorta
2	chr6:74477400-74543400	Weak transcription	Lung	lung
3	chr6:74484600-74542000	Weak transcription	Right Ventricle	heart
4	chr6:74495400-74533200	Weak transcription	Fetal Stomach	stomach
5	chr6:74512600-74534400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:74513800-74539600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:74514200-74535400	Weak transcription	NHLF	lung
8	chr6:74514200-74542800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr6:74514400-74534400	Weak transcription	Hela-S3	cervix
10	chr6:74514400-74545000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:74514400-74546200	Weak transcription	HSMM	muscle
12	chr6:74516400-74535000	Strong transcription	NHDF-Ad	bronchial
13	chr6:74521800-74536000	Weak transcription	Left Ventricle	heart
14	chr6:74521800-74541800	Weak transcription	Adipose Nuclei	Adipose
15	chr6:74521800-74545200	Weak transcription	Osteobl	bone
16	chr6:74524600-74535000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:74525200-74535800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr6:74526000-74535600	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr6:74526400-74542200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr6:74526400-74565000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr6:74526600-74535600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:74526800-74533200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr6:74527800-74541000	Weak transcription	Esophagus	oesophagus
24	chr6:74528600-74557000	Weak transcription	Primary T cells from cord blood	blood
25	chr6:74530800-74535000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:74531000-74541800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr6:74531200-74534000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr6:74531200-74536000	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr6:74531200-74544000	Weak transcription	NHEK	skin
30	chr6:74531200-74553400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:74531400-74535800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:74531400-74539600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr6:74531400-74545000	Weak transcription	Fetal Muscle Leg	muscle
34	chr6:74531600-74533600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:74531600-74534000	Weak transcription	HMEC	breast
36	chr6:74531600-74541600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:74531800-74533800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:74532200-74533400	Enhancers	Rectal Smooth Muscle	rectum
39	chr6:74532200-74546800	Weak transcription	HUVEC	blood vessel
40	chr6:74532600-74533400	Enhancers	Pancreatic Islets	Pancreatic Islet
41	chr6:74532600-74533600	Enhancers	Brain Hippocampus Middle	brain
42	chr6:74532800-74533200	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr6:74532800-74533400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:74532800-74533400	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr6:74532800-74533600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:74533000-74533400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:74533000-74533400	Flanking Active TSS	Brain Substantia Nigra	brain
48	chr6:74533000-74533400	Active TSS	Stomach Smooth Muscle	stomach
49	chr6:74533000-74533600	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links