Variant report

Variant	rs2920042
Chromosome Location	chr15:101228969-101228970
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:101222898..101225111-chr15:101228465..101230016,2	MCF-7	breast:
2	chr15:101212276..101215939-chr15:101228440..101232783,5	MCF-7	breast:
3	chr15:101223101..101225308-chr15:101226729..101229864,3	MCF-7	breast:
4	chr15:101197896..101200148-chr15:101228240..101229865,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1561813	1.00[ASN][1000 genomes]
rs1561814	1.00[ASN][1000 genomes]
rs1565749	1.00[ASN][1000 genomes]
rs1661792	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1689949	0.82[AMR][1000 genomes]
rs1689954	1.00[ASN][1000 genomes]
rs1689955	1.00[ASN][1000 genomes]
rs1689956	0.85[ASN][1000 genomes]
rs55638658	0.91[ASN][1000 genomes]
rs57924834	1.00[ASN][1000 genomes]
rs59491836	0.91[ASN][1000 genomes]
rs60807298	0.91[ASN][1000 genomes]
rs744766	1.00[ASN][1000 genomes]
rs894322	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530686	chr15:100388548-101244448	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	n/a
2	nsv870422	chr15:100460234-101401019	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	n/a
3	nsv1050155	chr15:100764638-101320462	Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	n/a
4	nsv542533	chr15:100764638-101320462	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	n/a
5	nsv1041172	chr15:100975213-101602839	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	n/a
6	nsv1050199	chr15:100977525-101607280	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	n/a
7	nsv542536	chr15:100977525-101607280	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	n/a
8	esv3446550	chr15:100983111-101616198	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	n/a
9	nsv530850	chr15:100988191-101602641	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	n/a
10	nsv1043180	chr15:100989328-101585798	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	n/a
11	nsv542537	chr15:100989328-101585798	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	n/a
12	nsv1043341	chr15:100989328-101606657	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	n/a
13	nsv542538	chr15:100989328-101606657	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	n/a
14	nsv530687	chr15:100996096-101609980	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	n/a
15	nsv534423	chr15:100996096-101645331	Genic enhancers ZNF genes & repeats Bivalent Enhancer Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	n/a
16	nsv948464	chr15:101002346-101610336	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	n/a
17	nsv949361	chr15:101002738-101595898	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	n/a
18	nsv817593	chr15:101012299-101602641	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	n/a
19	nsv530851	chr15:101042563-101627479	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	n/a
20	nsv916934	chr15:101055749-101585912	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	n/a
21	nsv948385	chr15:101120963-101387029	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	n/a
22	nsv1043985	chr15:101156747-101436615	Active TSS Genic enhancers Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	n/a
23	nsv1049749	chr15:101178550-101376368	Genic enhancers Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
24	nsv542539	chr15:101178550-101376368	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a
25	nsv1052636	chr15:101227885-101585798	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:101226000-101229000	Enhancers	Placenta	Placenta
2	chr15:101226200-101229400	Enhancers	Fetal Stomach	stomach
3	chr15:101226200-101231800	Enhancers	Fetal Muscle Leg	muscle
4	chr15:101226400-101229400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:101227000-101229800	Weak transcription	Right Ventricle	heart
6	chr15:101227000-101232000	Enhancers	Fetal Muscle Trunk	muscle
7	chr15:101227000-101233200	Weak transcription	Pancreas	Pancrea
8	chr15:101227000-101233200	Weak transcription	Spleen	Spleen
9	chr15:101227600-101229000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr15:101227800-101229000	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr15:101227800-101229000	Bivalent Enhancer	Adipose Nuclei	Adipose
12	chr15:101228000-101229000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:101228000-101229400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr15:101228200-101229000	Enhancers	Ovary	ovary
15	chr15:101228200-101229200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:101228200-101229200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:101228200-101229200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr15:101228200-101229400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr15:101228200-101229400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:101228200-101229600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr15:101228400-101229000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr15:101228400-101229000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
23	chr15:101228400-101229000	Bivalent Enhancer	Stomach Smooth Muscle	stomach
24	chr15:101228400-101229200	Enhancers	Muscle Satellite Cultured Cells	--
25	chr15:101228400-101229400	Enhancers	Lung	lung
26	chr15:101228400-101229400	Enhancers	NHDF-Ad	bronchial
27	chr15:101228400-101229800	Enhancers	Osteobl	bone
28	chr15:101228400-101230000	Enhancers	Right Atrium	heart
29	chr15:101228400-101233600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr15:101228600-101229000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr15:101228600-101229400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr15:101228600-101229400	Enhancers	NH-A	brain
33	chr15:101228600-101233600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:101228600-101233600	Weak transcription	NHEK	skin
35	chr15:101228600-101234600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr15:101228800-101229000	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr15:101228800-101232200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr15:101228800-101233600	Weak transcription	Esophagus	oesophagus

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