The 2.0 version of rSNPBase

Variant report

Variant rs2920873
Chromosome Location chr2:55321817-55321818
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:55315400-55323600 Weak transcription HSMMtube muscle
2 chr2:55316000-55322800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
3 chr2:55316000-55323800 Weak transcription NHDF-Ad bronchial
4 chr2:55316800-55327200 Enhancers Primary neutrophils fromperipheralblood blood
5 chr2:55317200-55323800 Weak transcription Fetal Muscle Leg muscle
6 chr2:55317400-55322000 Enhancers Primary monocytes fromperipheralblood blood
7 chr2:55318400-55323600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
8 chr2:55318400-55323600 Weak transcription Hela-S3 cervix
9 chr2:55318400-55329600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr2:55318600-55322800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
11 chr2:55319400-55322200 Enhancers Monocytes-CD14+_RO01746 blood
12 chr2:55319600-55322000 Enhancers NHEK skin
13 chr2:55319600-55322200 Enhancers HUVEC blood vessel
14 chr2:55319600-55322400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
15 chr2:55319800-55324600 Weak transcription Fetal Intestine Small intestine
16 chr2:55320000-55327200 Weak transcription Rectal Mucosa Donor 29 rectum
17 chr2:55320200-55322000 Enhancers Brain Angular Gyrus brain
18 chr2:55320200-55322000 Enhancers Brain Cingulate Gyrus brain
19 chr2:55320200-55323800 Weak transcription Stomach Mucosa stomach
20 chr2:55320400-55323800 Weak transcription Psoas Muscle Psoas
21 chr2:55320600-55322000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
22 chr2:55320600-55322000 Enhancers Brain Hippocampus Middle brain
23 chr2:55320600-55322000 Enhancers Brain Substantia Nigra brain
24 chr2:55320800-55322000 Enhancers Brain Inferior Temporal Lobe brain
25 chr2:55321000-55323600 Weak transcription Muscle Satellite Cultured Cells --
26 chr2:55321000-55323600 Weak transcription Fetal Heart heart
27 chr2:55321000-55323800 Weak transcription NH-A brain
28 chr2:55321000-55324000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
29 chr2:55321000-55324600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
30 chr2:55321000-55326600 Weak transcription HMEC breast
31 chr2:55321200-55322400 Enhancers Lung lung
32 chr2:55321400-55322000 Enhancers iPS-20b Cell Line embryonic stem cell
33 chr2:55321400-55322000 Enhancers Primary hematopoietic stem cells blood
34 chr2:55321400-55326400 Weak transcription Primary B cells from cord blood blood
35 chr2:55321600-55322000 Weak transcription Brain Anterior Caudate brain
36 chr2:55321600-55323600 Weak transcription K562 blood
37 chr2:55321600-55323600 Weak transcription Osteobl bone
38 chr2:55321600-55323800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
39 chr2:55321600-55323800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
40 chr2:55321600-55323800 Weak transcription A549 lung
41 chr2:55321600-55325000 Weak transcription Sigmoid Colon Sigmoid Colon
42 chr2:55321600-55327400 Weak transcription Cortex derived primary cultured neurospheres brain
43 chr2:55321600-55339400 Weak transcription Thymus Thymus
44 chr2:55321800-55323600 Weak transcription NHLF lung
45 chr2:55321800-55324000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr2:55321800-55324600 Weak transcription ES-I3 Cell Line embryonic stem cell
47 chr2:55321800-55324600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr2:55321800-55336400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015