Variant report

Variant	rs2921521
Chromosome Location	chr5:14907664-14907665
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10052744	1.00[CHD][hapmap]
rs10080009	1.00[CHD][hapmap]
rs12516899	1.00[CHD][hapmap]
rs153921	1.00[CHD][hapmap]
rs153926	1.00[CHD][hapmap]
rs17250963	1.00[CHD][hapmap]
rs17364066	1.00[CHD][hapmap]
rs187483	1.00[CHD][hapmap]
rs3045	1.00[CHD][hapmap]
rs697565	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv830212	chr5:14784197-14966683	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	esv2755538	chr5:14814900-14927500	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	nsv530221	chr5:14859687-15364470	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	nsv432717	chr5:14887400-15126500	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1017579	chr5:14888997-15194335	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14902000-14908400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:14902000-14908400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:14902000-14913600	Weak transcription	NH-A	brain
4	chr5:14902200-14912000	Weak transcription	Placenta	Placenta
5	chr5:14903000-14912600	Weak transcription	Osteobl	bone
6	chr5:14903200-14908200	Weak transcription	Hela-S3	cervix
7	chr5:14904000-14908400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:14904000-14908400	Weak transcription	NHEK	skin
9	chr5:14906600-14908800	Weak transcription	Fetal Heart	heart
10	chr5:14906600-14912000	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr5:14907200-14908400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr5:14907400-14908400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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